WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000418602    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000418602 (Len=122)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000418602, Len=122):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDS 80  
WD40-rpts      (________________WD 1_______________)   (_________________WD 2________________) 

Query       81 YGRPLYNSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTG 122 
WD40-rpts       (________________WD 3________________)   



3 WD40-repeats found in QUERY=ENSP00000418602 (Len=122):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       6.25  372.70  0.00059       17.5%     42.76
  WD 2:  Seg  4    41-79       9.05  488.60  1.6e-05       22.5%     54.14
  WD 3:  Seg  8    82-119      8.25  455.48  4.5e-05       32.5%     51.50
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-37     -MLRSTLAQQGTPVYSVAWGPDSEKVLYTAGK-QLIIKP
   WD 2   41-79     NAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWD
   WD 3   82-119    GRPLYNSQPHEHPITSVAWAPDGELFAVGS-FHTLRLCD

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019