Input parameters:
Query = ENSP00000418602 (Len=122)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000418602, Len=122):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDS 80
WD40-rpts (________________WD 1_______________) (_________________WD 2________________)
Query 81 YGRPLYNSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTG 122
WD40-rpts (________________WD 3________________)
3 WD40-repeats found in QUERY=ENSP00000418602 (Len=122):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-37 6.25 372.70 0.00059 17.5% 42.76
WD 2: Seg 4 41-79 9.05 488.60 1.6e-05 22.5% 54.14
WD 3: Seg 8 82-119 8.25 455.48 4.5e-05 32.5% 51.50
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-37 -MLRSTLAQQGTPVYSVAWGPDSEKVLYTAGK-QLIIKP
WD 2 41-79 NAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWD
WD 3 82-119 GRPLYNSQPHEHPITSVAWAPDGELFAVGS-FHTLRLCD
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD