WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000418455    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000418455 (Len=121)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000418455, Len=121):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRLKISLLKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETTQIVKLPDDIYPIDFHWFPKSLGVKKQTQAESF 80  
WD40-rpts        (_________________WD 1________________)           (__________________WD 2_____

Query       81 VLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTAL 121 
WD40-rpts      ____________)                            



2 WD40-repeats found in QUERY=ENSP00000418455 (Len=121):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-41       6.52  383.85  0.00042       25.0%     37.85
  WD 2:  Seg  6    53-93       4.15  286.29  0.00860       15.0%     17.49
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    3-41     LKISLLKEPKHQEL-VSCVGWTTAEE-LYSCSDDHQIVKWN
   WD 2   53-93     LPDDIYPIDFHWFPKSLGVKKQTQAESFVLTSSDGKFHLIS

   WD40 Template    TGECLRTLSGHTSG-VTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019