WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000417754    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000417754 (Len=118)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000417754, Len=118):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 DLASTKPGTSSAPFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFL 80  
WD40-rpts              (__________________WD 1_________________)   (__________________WD 2_____

Query       81 CASSDKGTVHIFALKDTRLNRRSAHLRRWDLPQICLHS 118 
WD40-rpts      ____________)                         



2 WD40-repeats found in QUERY=ENSP00000417754 (Len=118):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-49       8.15  451.40  5.1e-05       32.5%     53.14
  WD 2:  Seg  5    53-93       7.71  432.99  9.1e-05       27.5%     57.26
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    9-49     TSSAPFTINAHQ--SDIACVSLNQPGTVVASASQKGTLIRLFD
   WD 2   53-93     -KEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGT-VHIFA

   WD40 Template    TGECLRTLSGHT--SGVTSVSFSPDGKRLVSGSEDGT-IKVWD


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Last modified: 09 Jan 2019