WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000416289    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000416289 (Len=110)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000416289, Len=110):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENPQDIFSSNGGCLSDIVIEKYLVESKESVSHVQLACSMQDCAFPLDGTELCIWNTKDPSHQLLILRGHHQPITAMAFG 80  
WD40-rpts      (_________________________WD 1_________________________)    (_________________WD

Query       81 NKVNPLLICSASLDYVIMWNLDECREKVLQ 110 
WD40-rpts       2_________________)          



2 WD40-repeats found in QUERY=ENSP00000416289 (Len=110):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-56       5.58  345.13  0.00139       10.0%     39.71
  WD 2:  Seg  5    61-100      5.65  348.03  0.00127       25.0%     39.59
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-56     MENPQDIFSSNGGCLSDIVIEKYLVESKESVSHVQLAC--SMQDCAFPLDGTELCIWN
   WD 2   61-100    -SH----------------QLLILRGHHQPITAMAFGNKVNPLLICSASLD-YVIMWN

   WD40 Template    TGE----------------CLRTLSGHTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019