Input parameters:
Query = ENSP00000415833 (Len=189)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000415833, Len=189):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQPMSFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNETSYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHR 80
WD40-rpts (_____________WD
Query 81 QVVCGTKCNTLFVVDVQTSQITKIPILKDREPGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDD 160
WD40-rpts 1_____________) (_________________WD 2_________________) (_______
Query 161 GHKDWIFSIAWISDTMAVSGSRDGSMGLW 189
WD40-rpts _________WD 3_______________)
3 WD40-repeats found in QUERY=ENSP00000415833 (Len=189):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 64-95 4.56 302.90 0.00514 17.5% 39.69
WD 2: Seg 6 109-148 5.45 339.74 0.00164 10.0% 32.79
WD 3: Seg 9 153-189 4.74 310.65 0.00405 27.5% 37.37
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 64-95 ------HLGTLNKVFASQWLNH-RQVVCGTKC-NTLFVVD
WD 2 109-148 DREPGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYR
WD 3 153-189 DPVCVGDDGHKDWIFSIAWISDT-MAVSGSRD-GSMGLW-
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSED-GTIKVWD