WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000415833    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000415833 (Len=189)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000415833, Len=189):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQPMSFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNETSYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHR 80  
WD40-rpts                                                                     (_____________WD 

Query       81 QVVCGTKCNTLFVVDVQTSQITKIPILKDREPGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDD 160 
WD40-rpts      1_____________)             (_________________WD 2_________________)    (_______

Query      161 GHKDWIFSIAWISDTMAVSGSRDGSMGLW 189 
WD40-rpts      _________WD 3_______________)



3 WD40-repeats found in QUERY=ENSP00000415833 (Len=189):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    64-95       4.56  302.90  0.00514       17.5%     39.69
  WD 2:  Seg  6   109-148      5.45  339.74  0.00164       10.0%     32.79
  WD 3:  Seg  9   153-189      4.74  310.65  0.00405       27.5%     37.37
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   64-95     ------HLGTLNKVFASQWLNH-RQVVCGTKC-NTLFVVD
   WD 2  109-148    DREPGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYR
   WD 3  153-189    DPVCVGDDGHKDWIFSIAWISDT-MAVSGSRD-GSMGLW-

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSED-GTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019