WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000415355    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000415355 (Len=147)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000415355, Len=147):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNQTDLLALGTAVGSILLYSTVKGELHSKLISGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNS 80  
WD40-rpts                              (__________________WD 1_________________)   (___________

Query       81 SVSSLCISPDGKMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYF 147 
WD40-rpts      _____WD 2_______________)   (_________________WD 3________________)



3 WD40-repeats found in QUERY=ENSP00000415355 (Len=147):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    25-65       8.48  464.82  3.4e-05       32.5%     57.13
  WD 2:  Seg  7    69-105      7.63  430.00  1.0e-04       37.5%     51.38
  WD 3:  Seg 11   109-147      8.54  467.48  3.1e-05       25.0%     48.02
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   25-65     GELHSKLISGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWN
   WD 2   69-105    CKVKCKW--KGDNSSVSSLCISPDGKMLLSAGR--TIKLWV
   WD 3  109-147    KEVYRHF--TGHATPVSSLMFTTIRPPNESQPFDGITGLYF

   WD40 Template    GECLRTL--SGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019