Input parameters:
Query = ENSP00000415355 (Len=147)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000415355, Len=147):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSNQTDLLALGTAVGSILLYSTVKGELHSKLISGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNS 80
WD40-rpts (__________________WD 1_________________) (___________
Query 81 SVSSLCISPDGKMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYF 147
WD40-rpts _____WD 2_______________) (_________________WD 3________________)
3 WD40-repeats found in QUERY=ENSP00000415355 (Len=147):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 25-65 8.48 464.82 3.4e-05 32.5% 57.13
WD 2: Seg 7 69-105 7.63 430.00 1.0e-04 37.5% 51.38
WD 3: Seg 11 109-147 8.54 467.48 3.1e-05 25.0% 48.02
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 25-65 GELHSKLISGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWN
WD 2 69-105 CKVKCKW--KGDNSSVSSLCISPDGKMLLSAGR--TIKLWV
WD 3 109-147 KEVYRHF--TGHATPVSSLMFTTIRPPNESQPFDGITGLYF
WD40 Template GECLRTL--SGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD