WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000414734    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000414734 (Len=297)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000414734, Len=297):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLI 80  
WD40-rpts                                                  (_________________WD 1______________

Query       81 VWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTS 160 
WD40-rpts      __)   (_________________WD 2________________)       (________________WD 3_______

Query      161 SGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICAFSLSGR 240 
WD40-rpts      _________)   (_________________WD 4________________)   (_________________WD 5___

Query      241 LLFAGYDDFNCNVWDSMKSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN 297 
WD40-rpts      ______________)   (_________________WD 6________________)



6 WD40-repeats found in QUERY=ENSP00000414734 (Len=297):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    45-83       9.95  525.62  5.1e-06       40.0%     53.69
  WD 2:  Seg  5    87-125      8.99  485.92  1.8e-05       15.0%     53.85
  WD 3:  Seg  9   133-170      7.79  436.39  8.2e-05       32.5%     46.63
  WD 4:  Seg 13   174-212     10.09  531.43  4.3e-06       35.0%     57.25
  WD 5:  Seg 17   216-255      9.27  497.54  1.2e-05       37.5%     56.49
  WD 6:  Seg 21   259-297     10.03  529.05  4.6e-06       32.5%     51.35
Multiple sequence alignment of 6 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   45-83     MRTRRTLRGHLAKIYAM-HWATDSKLLVSASQDGKLIVWD
   WD 2   87-125    TNKVHAIPLRSSWVMTC-AYAPSGNFVACGGLDNMCSIYN
   WD 3  133-170    VKVSRELSAHTGYLSCC-RFLDDNN-IVTSSGDTTCALWD
   WD 4  174-212    GQQKTVFVGHTGDCMSL-AVSPDFNLFISGACDASAKLWD
   WD 5  216-255    GTCRQTFTGHESDINAICAFSLSGRLLFAGYDDFNCNVWD
   WD 6  259-297    SERVGILSGHDNRVSCL-GVTADGMAVATGSWDSFLKIWN

   WD40 Template    GECLRTLSGHTSGVTSV-SFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019