Input parameters:
Query = ENSP00000414734 (Len=297)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000414734, Len=297):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLI 80
WD40-rpts (_________________WD 1______________
Query 81 VWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTS 160
WD40-rpts __) (_________________WD 2________________) (________________WD 3_______
Query 161 SGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICAFSLSGR 240
WD40-rpts _________) (_________________WD 4________________) (_________________WD 5___
Query 241 LLFAGYDDFNCNVWDSMKSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN 297
WD40-rpts ______________) (_________________WD 6________________)
6 WD40-repeats found in QUERY=ENSP00000414734 (Len=297):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 45-83 9.95 525.62 5.1e-06 40.0% 53.69
WD 2: Seg 5 87-125 8.99 485.92 1.8e-05 15.0% 53.85
WD 3: Seg 9 133-170 7.79 436.39 8.2e-05 32.5% 46.63
WD 4: Seg 13 174-212 10.09 531.43 4.3e-06 35.0% 57.25
WD 5: Seg 17 216-255 9.27 497.54 1.2e-05 37.5% 56.49
WD 6: Seg 21 259-297 10.03 529.05 4.6e-06 32.5% 51.35
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 45-83 MRTRRTLRGHLAKIYAM-HWATDSKLLVSASQDGKLIVWD
WD 2 87-125 TNKVHAIPLRSSWVMTC-AYAPSGNFVACGGLDNMCSIYN
WD 3 133-170 VKVSRELSAHTGYLSCC-RFLDDNN-IVTSSGDTTCALWD
WD 4 174-212 GQQKTVFVGHTGDCMSL-AVSPDFNLFISGACDASAKLWD
WD 5 216-255 GTCRQTFTGHESDINAICAFSLSGRLLFAGYDDFNCNVWD
WD 6 259-297 SERVGILSGHDNRVSCL-GVTADGMAVATGSWDSFLKIWN
WD40 Template GECLRTLSGHTSGVTSV-SFSPDGKRLVSGSEDGTIKVWD