WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000414683    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000414683 (Len=394)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000414683, Len=394):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIRLPDLALKRIFSFLDLFGLLQVSQVNKHWNRIADSDYLWRSLSLQRWDCSNFTNQHLGTHTWKQFFLHQRRKELRLA 80  
WD40-rpts                                                                                      

Query       81 LAQPHNFIYKVTKNIAFETELAYLSGNRLTVDEQEKSIICSVSPKQELCAWDVQEVGDAAGDIYTFTLPGLRDVSKVTAF 160 
WD40-rpts                 (__________________WD 1_________________)                            

Query      161 QYGIVLLHCSPDKKWVFACGTYSRTLPQVFLTESLLRPSEGSVPLSTFLPHKLCASACWTPKVKNRITLMSQSSTGKKTE 240 
WD40-rpts                                                                                      

Query      241 FITFDLTTKKTGGQTVIQAYEIASFQVAAHLKCPIWMGASDGYMIVFTSGPYLLLFSITGFLLQRFEDHQAAINNFWVDP 320 
WD40-rpts                (_____________________WD 2____________________)                       

Query      321 CYVLTTSENSVHVYMWEEGGRHPYLRSCCHLENTWHDHTTDSCISSVMCDNASIVLRVRKVSDSSILVMYSLNT 394 
WD40-rpts                                                                                



2 WD40-repeats found in QUERY=ENSP00000414683 (Len=394):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    92-132      3.15  244.78  0.03085       20.0%     31.76
  WD 2:  Seg 15   251-297      3.13  243.75  0.03184       10.0%     47.76
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   92-132    TKNIAFE---------TELAYLSGNRLTVDEQEKSIICSVSPKQELCAWD
   WD 2  251-297    TGG-QTVIQAYEIASFQVAAHLKCPIWMGAS--DGYMIVFTSGPYLLLFS

   WD40 Template    TGE-CLR---------TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019