WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000414422    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000414422 (Len=260)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000414422, Len=260):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XSLKLYPFQCFLAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWDLRRPYEPINSIKRFLSTELAWLLPYNGVTVAQDNCY 80  
WD40-rpts         (__________________WD 1_________________)                                    

Query       81 ASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTIAAGDISGELIAAILPDMALNPINVKRPVERRFVRIRTS 160 
WD40-rpts                            (______________WD 2_____________)                         

Query      161 NSSCWILTHMPSQILPIYKADLIPYQDSPEGPDHSSASSGVPNPPKARTYTETVNHHYLLFQDTDLGSFHDLLRREPMLR 240 
WD40-rpts                                                                                      

Query      241 MQEGEGHSQLCLDRLQLEAI 260 
WD40-rpts                          



2 WD40-repeats found in QUERY=ENSP00000414422 (Len=260):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       5.85  356.12  0.00099       25.0%     44.91
  WD 2:  Seg  8   103-135      3.09  242.19  0.03340       15.0%     41.66
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    4-44     KLYPFQCFLAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWD
   WD 2  103-135    -------TAPRKGTVWSLSGSD-WLGTIAAGDISGELIAAI

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019