WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000414362    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000414362 (Len=625)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000414362, Len=625):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLN 80  
WD40-rpts      (___________________WD 1___________________)(___________________WD 2____________

Query       81 GEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHI 160 
WD40-rpts      ______)   (_________________WD 3________________)     (________________WD 4_____

Query      161 AAGSIDYISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQ 240 
WD40-rpts      ___________)            (________________WD 5________________)   (______________

Query      241 SIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALISGGTDTHLVFRPLMEKVEV 320 
WD40-rpts      ___WD 6________________)            (________________WD 7_______________)(______

Query      321 KNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISP 400 
WD40-rpts      __________WD 8_______________) (__________WD 9__________)  (_________________WD1

Query      401 CGSWIAYSTVSRFFLYRLNYEHDNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQ 480 
WD40-rpts      0________________)        (_________________WD11________________)(______________

Query      481 SGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQY 560 
WD40-rpts      _______WD12____________________)   (_________________WD13________________)      

Query      561 TDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLVSSSLLPPKSSSES 625 
WD40-rpts               (_________________WD14________________)                 



14 WD40-repeats found in QUERY=ENSP00000414362 (Len=625):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       8.25  455.38  4.5e-05       27.5%     56.85
  WD 2:  Seg  5    45-87       8.08  448.46  5.6e-05       27.5%     56.67
  WD 3:  Seg  9    91-129      8.86  480.81  2.1e-05       25.0%     58.09
  WD 4:  Seg 13   135-172      7.04  405.37  0.00021       30.0%     49.44
  WD 5:  Seg 18   185-222      6.15  368.72  0.00067       25.0%     39.99
  WD 6:  Seg 21   226-264      8.30  457.60  4.2e-05       17.5%     54.41
  WD 7:  Seg 25   277-313      6.14  368.32  0.00068       25.0%     51.47
  WD 8:  Seg 29   314-350      5.07  324.12  0.00267       12.5%     43.09
  WD 9:  Seg 33   352-377      3.04  240.31  0.03537        7.5%     20.82
  WD10:  Seg 35   380-418      5.24  331.31  0.00213       10.0%     56.91
  WD11:  Seg 39   427-465      7.79  436.37  8.2e-05       15.0%     57.46
  WD12:  Seg 43   466-512      7.80  437.06  8.0e-05       20.0%     48.76
  WD13:  Seg 47   516-554      8.15  451.34  5.1e-05       17.5%     57.41
  WD14:  Seg 51   570-608      3.77  270.19  0.01414       12.5%     43.57
Multiple sequence alignment of 14 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-44     MG-------E---FKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYN
   WD 2   45-87     LS-------ANYFQ----EKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYD
   WD 3   91-129    -L-------N---I----KYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQ
   WD 4  135-172    -I-------Q---F----ERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFD
   WD 5  185-222    -D-------R---Q----YMGVSKRKCIVWGVAFLSDGTIISVDS-AGKVQFWD
   WD 6  226-264    -G-------T---L----VKSHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQ
   WD 7  277-313    -W-------V---R----TKPFQHHTHDVRTVAHSPTA--LISGGTDTHLVFRP
   WD 8  314-350    LM-------E---K----V-EVKNYDAALRKITFP--HRCLISCSKKRQLLLFQ
   WD 9  352-377    ----------------------------AHHLELWRLGSTVATGKNGDTLPLSK
   WD10  380-418    -D-------H---L----LHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRL
   WD11  427-465    -L-------K---R----VSKMPAFLRSALQILFSEDSTKLFVASNQGALHIVQ
   WD12  466-512    LSGGSFKHLH---A----FQPQSGTVEAMCLLAVSPDGNWLAASGTSAGVHVYN
   WD13  516-554    -L-------K---L----HCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYS
   WD14  570-608    -Q-------G---F----HHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIID

   WD40 Template    TG-------E---C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019