WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000414226    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000414226 (Len=89)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000414226, Len=89):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEEENIRVVRCGGSELNFRRAVFSADSKYIFCVSGDFVKVYSTVTEECVHILHGHRNLVTGIQLNPNNHLQVPLHALRI 80  
WD40-rpts          (_________________WD 1________________)   (___________________WD 2__________

Query       81 SKRAVFLFP 89  
WD40-rpts      ________)



2 WD40-repeats found in QUERY=ENSP00000414226 (Len=89):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-43       6.90  399.55  0.00026       22.5%     50.93
  WD 2:  Seg  5    47-89       7.54  425.92  0.00011       22.5%     37.07
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    5-43     ENIRVVRCGGSELNFRRAVFSADSKYIFCV----SGD-FVKVYS
   WD 2   47-89     -EECVHILHGHRNLVTGIQLNPNNHLQVPLHALRISKRAVFLFP

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSG----SEDGTIKVWD


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Last modified: 09 Jan 2019