Input parameters:
Query = ENSP00000413219 (Len=152)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000413219, Len=152):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLI 80
WD40-rpts (____________WD 1____________)_________________WD 2______________
Query 81 IWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL 152
WD40-rpts __) (_________________WD 3________________)
3 WD40-repeats found in QUERY=ENSP00000413219 (Len=152):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 16-45 3.54 260.77 0.01890 2.5% 34.06
WD 2: Seg 4 45-83 10.20 535.93 3.7e-06 35.0% 45.30
WD 3: Seg 7 87-125 8.82 479.19 2.2e-05 15.0% 52.80
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 16-45 --------NQIRDARKACGDSTLT-QITAGLDPVGRIQM
WD 2 45-83 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD
WD 3 87-125 TNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYS
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD