WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000412517 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000412517 (Len=1631) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000412517, Len=1631): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHSAEISDMAVNYENTLIAAGSCDKVVRVWCL 80
WD40-rpts (________________WD 1_______________) (_________________WD 2________________)(
Query 81 RTCAPVAVLQGHSASITSIQFCPSTKGTNRYLTSTGADGTICFWQWHVKTMKFRDRPVKFTERSRPGVQISCSSFSSGGM 160
WD40-rpts ____________________WD 3____________________) (__________________WD 4____
Query 161 FITTGSTDHVIRIYYLGSEVPEKIAELESHTDKVVAVQFCNNGDSLRFVSGSRDGTARIWQYQQQEWKSIVLDMATKMTG 240
WD40-rpts ______________)(____________________WD 5____________________) (_______
Query 241 NNLPSGEDKITKLKVTMVAWDRYDTTVITAVNNFLLKVWNSITGQLLHTLSGHDDEVFVLEAHPFDQRIILSAGHDGNIF 320
WD40-rpts ______________WD 6_____________________) (_________________WD 7_______________
Query 321 IWDLDRGTKIRNYFNMIEGQGHGAVFDCKFSPDGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNY 400
WD40-rpts __) (_________________WD 8________________)
Query 401 VLDEQTQQAPHLMPPPFLVDVDGNPHPTKFQRLVPGRENCKDEQLIPQLGYVANGDGEVVEQVIGQQTNDQDESILDGII 480
WD40-rpts
Query 481 RELQREQDLRLINEGDVPHLPVNRAYSVNGALRSPNMDISSSPNIRLRRHSSQIEGVRQMHNNAPRSQMATERDLMAWSR 560
WD40-rpts (______________WD 9_____________)
Query 561 RVVVNELNNGVSRVQEECRTAKGDIEISLYTVEKKKKPSYTTQRNDYEPSCGRSLRRTQRKRQHTYQTRSNIEHNSQASC 640
WD40-rpts
Query 641 QNSGVQEDSDSSSEEDETVGTSDASVEDPVVEWQSESSSSDSSSEYSDWTADAGINLQPPKRQTRQTTRKICSSSDEENL 720
WD40-rpts
Query 721 KSLEERQKKPKQTRKKKGGLVSIAGEPNEEWFAPQWILDTIPRRSPFVPQMGDELIYFRQGHEAYVRAVRKSKIYSVNLQ 800
WD40-rpts
Query 801 KQPWNKMDLREQEFVKIVGIKYEVGPPTLCCLKLAFLDPISGKMTGESFSIKYHDMPDVIDFLVLHQFYNEAKERNWQIG 880
WD40-rpts
Query 881 DRFRSIIDDAWWFGTVESQQPFQPEYPDSSFQCYSVHWDNNEREKMSPWDMEPIPEGTAFPDEVGAGVPVSQEELTALLY 960
WD40-rpts
Query 961 KPQEGEWGAHSRDEECERVIQGINHLLSLDFASPFAVPVDLSAYPLYCTVVAYPTDLNTIRRRLENRFYRRISALMWEVR 1040
WD40-rpts
Query 1041 YIEHNARTFNEPDSPIVKAAKIVTDVLLRFIGDQSCTDILDTYNKIKAEERNSTDAEEDTEIVDLDSDGPGTSSGRKVKC 1120
WD40-rpts
Query 1121 RGRRQSLKCNPDAWKKQCKELLSLIYEREDSEPFRQPADLLSYPGHQEQEGESSESVVPERQQDSSLSEDYQDVIDTPVD 1200
WD40-rpts
Query 1201 FSTVKETLEAGNYGSPLEFYKDVRQIFNNSKAYTSNKKSRIYSMMLRLSALFESHIKNIISEYKSAIQSQKRRRPRYRKR 1280
WD40-rpts
Query 1281 LRSSSSSLSSSGAPSPKGKQKQMKLQPKNDQNTSVSHARTSSPFSSPVSDAAEGLSLYLLDDEPDGPFSSSSFGGYSRSG 1360
WD40-rpts
Query 1361 NSHDPGKAKSFRNRVLPVKQDHSLDGPLTNGDGREPRTGIKRKLLSASEEDENMGGEDKEKKETKEKSHLSTSESGELGS 1440
WD40-rpts
Query 1441 SLSSESTCGSDSDSESTSRTDQDYVDGDHDYSKFIQTRPKRKLRKQHGNGKRNWKTRGTGGRGRWGRWGRWSRGGRGRGG 1520
WD40-rpts
Query 1521 RGRGSRGRGGGGTRGRGRGRGGRGASRGATRAKRARIADDEFDTMFSGRFSRLPRIKTRNQGRRTVLYNDDSDNDNFVST 1600
WD40-rpts
Query 1601 EDPLNLGTSRSGRVRKMTEKARVSHLMGWNY 1631
WD40-rpts
 9 WD40-repeats found in QUERY=ENSP00000412517 (Len=1631): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-37 8.27 456.42 4.4e-05 32.5% 41.66 WD 2: Seg 4 41-79 8.85 480.30 2.1e-05 27.5% 52.93 WD 3: Seg 8 80-125 7.72 433.43 9.0e-05 37.5% 53.75 WD 4: Seg 13 134-175 6.60 387.26 0.00038 22.5% 45.34 WD 5: Seg 17 176-221 8.14 450.90 5.2e-05 45.0% 50.91 WD 6: Seg 22 233-280 4.91 317.68 0.00325 22.5% 44.34 WD 7: Seg 25 284-323 8.15 451.42 5.1e-05 40.0% 56.06 WD 8: Seg 30 332-370 5.50 342.03 0.00153 22.5% 44.02 WD 9: Seg 44 527-559 3.11 242.94 0.03264 12.5% 23.54Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-37 -------M--HK--RILGHLSS--------VYCVAFDR-S----GRRI--FTGSDDCLVKIWA WD 2 41-79 -G----RL--LA--TLRGHSAE--------ISDMAVNY-E----NTLI--AAGSCDKVVRVWC WD 3 80-125 LR----TCAPVA--VLQGHSAS--------ITSIQFCP-STKGTNRYL--TSTGADGTICFWQ WD 4 134-175 RD----RP--VKFTERSRPGVQ--------ISCSSFSS-G----GMFI--TTGSTDHVIRIYY WD 5 176-221 LGSEVPEK--IA--ELESHTDK--------VVAVQFCN-N----GDSLRFVSGSRDGTARIWQ WD 6 233-280 DM----AT--KM--TGNNLPSGEDKITKLKVTMVAWDR-Y----DTTV--ITAVNNFLLKVWN WD 7 284-323 -G----QL--LH--TLSGHDDE--------VFVLEAHPFD----QRII--LSAGHDGNIFIWD WD 8 332-370 NY----FN--MI--EGQGH-GA--------VFDCKFSP-D----GNHF--ACTDSHGHLLLFG WD 9 527-559 ---------------LRRHSSQ--------IEGVRQMH-N----NAPR--SQMATERDLMAWS WD40 Template TG----EC--LR--TLSGHTSG--------VTSVSFSP-D----GKRL--VSGSEDGTIKVWD |
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