WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000412348    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000412348 (Len=212)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000412348, Len=212):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRALGRLAQVCRWLRRFTSCDLLWRRIARASLNSGFTRLGTDLMTSVPVKERVKVSQNWRLGRCREGILLKWRCRQMPWM 80  
WD40-rpts                                                                     (________________

Query       81 QLEDDSLYISQANFILAYQFRPDGASLNRRPLGVFAGHDEDVCHFVLANSHIVSAGGDGKIGIHKIHSTFTVKYSAHEQE 160 
WD40-rpts      _WD 1________________)      (________________WD 2_______________)  (____________

Query      161 VNCVDCKGGIIVSGSRDRTAKVWPLASGRLGQCLHTIQTEDRVWSIAISPLL 212 
WD40-rpts      ____WD 3_______________)                            



3 WD40-repeats found in QUERY=ENSP00000412348 (Len=212):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    64-102      4.98  320.31  0.00300        5.0%     33.46
  WD 2:  Seg  6   109-145      6.63  388.71  0.00036       25.0%     47.28
  WD 3:  Seg 10   148-184      7.05  406.05  0.00021       35.0%     45.79
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   64-102    CREGILLKWRCRQMPWMQLEDDSLYISQANFILAYQFRP
   WD 2  109-145    RRPLGVFAGHDEDVCH--FVLANSHIVSAGGDGKIGIHK
   WD 3  148-184    STFTVKYSAHEQEVNCV--DCKGGIIVSGSRDRTAKVWP

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019