WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000412164    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000412164 (Len=213)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000412164, Len=213):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT 80  
WD40-rpts      (_______________WD 1_______________)(___________________WD 2___________________)

Query       81 LKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAG 160 
WD40-rpts           (_________________WD 3________________)  (___________________WD 4__________

Query      161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWPLKHYHCWR 213 
WD40-rpts      _________)                                           



4 WD40-repeats found in QUERY=ENSP00000412164 (Len=213):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       6.85  397.53  0.00027        5.0%     41.17
  WD 2:  Seg  4    37-80       9.03  487.55  1.7e-05       25.0%     54.06
  WD 3:  Seg  8    86-124      7.73  434.04  8.8e-05       12.5%     54.74
  WD 4:  Seg 12   127-170      8.87  481.13  2.0e-05       22.5%     53.01
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-36     ------------MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYE
   WD 2   37-80     KSGAKWT----KVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT
   WD 3   86-124    -W----K----PTLVILRINRAARCVRWAPNENKFAVGSGSRVISICY
   WD 4  127-170    QE----NDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFS

   WD40 Template    TG----E----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019