WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000411919    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000411919 (Len=177)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000411919, Len=177):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEAEEQEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLD 80  
WD40-rpts                            (_______________WD 1_______________)  (_________________WD

Query       81 ESGEHMGVCSEDGKVQVFGLYSGEEFHETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGN 160 
WD40-rpts       2________________)(____________________WD 3___________________)                

Query      161 IRSVKWRGHLIAWANNM 177 
WD40-rpts                       



3 WD40-repeats found in QUERY=ENSP00000411919 (Len=177):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    23-58       4.23  289.50  0.00779       15.0%     43.97
  WD 2:  Seg  5    61-99       8.35  459.42  4.0e-05       20.0%     53.14
  WD 3:  Seg  9   100-144      5.57  344.62  0.00141       10.0%     39.57
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   23-58     SNGVTEIL--QKDAASCMTVHD-------KFLALGTHYGKVYLLD
   WD 2   61-99     -GNITQKFDVSPVKINQISLDES-----GEHMGVCSEDGKVQVFG
   WD 3  100-144    LYSGEEFHETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-----GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019