WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000411012 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000411012 (Len=948) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000411012, Len=948): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTGQARFHRGAEACRAIRQCRSRRPRAAHPEGRAGSGRGSRHASPGVRRGGFSLLLLNLEEYYFEQHRANHILHKGSHHE 80
WD40-rpts
Query 81 RKIRGSLKICSKSVIFEPDSISQPIIKIPLRDCIKIGKHGENGANRHFTKAKSGGISLIFSQVYFIKEHNVVAPYKIERG 160
WD40-rpts
Query 161 KMEYVFELDVPGKVEDVVETLLQLHRASCLDKLGDQTAMITAILQSRLARTSFDKNRFQNISEKLHMECKAEMVTPLVTN 240
WD40-rpts
Query 241 PGHVCITDTNLYFQPLNGYPKPVVQITLQDVRRIYKRRHGLMPLGLEVFCTEDDLCSDIYLKFYEPQDRDDLYFYIATYL 320
WD40-rpts
Query 321 EHHVAEHTAESYMLQWQRGHLSNYQYLLHLNNLADRSCNDLSQYPVFPWIIHDYSSSELDLSNPGTFRDLSKPVGALNKE 400
WD40-rpts
Query 401 RLERLLTRYQEMPEPKFMYGSHYSSPGYVLFYLVRIAPEYMLCLQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEF 480
WD40-rpts
Query 481 YGDDVSFLVNSLKLDLGKRQGGQMVDDVELPPWASSPEDFLQKSKDALESNYVSEHLHEWIDLIFGYKQKGSDAVGAHNV 560
WD40-rpts
Query 561 FHPLTYEGGVDLNSIQDPDEKVAMLTQILEFGQTPKQLFVTPHPRRITPKFKSLSQTSSYNASMADSPGEESFEDLTEES 640
WD40-rpts (_______
Query 641 KTLAWNNITKLQLHEHYKIHKEAVTGITVSRNGSSVFTTSQDSTLKMFSKESKMLQRSISFSNMALSSCLLLPGDATVIT 720
WD40-rpts ___________________WD 1_________________________) (_________________WD 2______
Query 721 SSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHDNRLYSASWDSTVKVWSGVPAEMPGTKRHHFDLLAELEHDVSVDTI 800
WD40-rpts __________) (________________WD 3_______________)(_______________________WD 4_
Query 801 SLNAASTLLVSGTKEGTVNIWDLTTATLMHQIPCHSGIVCDTAFSPDSRHVLSTGTDGCLNVIDVQTGMLISSMTSDEPQ 880
WD40-rpts _____________________) (_________________WD 5________________)(_______________
Query 881 RCFVWDGNSVLSGSQSGELLVWDLLGAKISERIQGHTGAVTCIWMNEQCSSIITGGEDRQIIFWKLQY 948
WD40-rpts __WD 6________________) (_________________WD 7________________)
 7 WD40-repeats found in QUERY=ENSP00000411012 (Len=948): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 16 633-689 3.31 251.21 0.02534 22.5% 43.02 WD 2: Seg 19 693-731 4.31 292.79 0.00703 15.0% 49.93 WD 3: Seg 23 735-771 5.72 351.02 0.00116 37.5% 55.31 WD 4: Seg 27 772-822 5.23 330.84 0.00216 30.0% 47.83 WD 5: Seg 30 826-864 5.40 337.77 0.00174 27.5% 56.72 WD 6: Seg 34 865-903 4.27 291.06 0.00742 32.5% 38.39 WD 7: Seg 38 907-945 6.14 368.35 0.00068 25.0% 54.07Multiple sequence alignment of 7 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 633-689 FEDLTEESKTLAWNNITKLQL-----------HEHYKIHKEAVTGITVSRNGSSVFTTSQDSTLKMFS WD 2 693-731 -K-----------------ML-----------QRSISFSNMALSSCLLLPGDATVITSSWDNNVYFYS WD 3 735-771 -G-----------------RR-----------QDTLMGHDDAVSKICWHDN--RLYSASWDSTVKVWS WD 4 772-822 GV-----------------PAEMPGTKRHHFDLLAELEHDVSVDTISLNAASTLLVSGTKEGTVNIWD WD 5 826-864 -A-----------------TL-----------MHQIPCHSGIVCDTAFSPDSRHVLSTGTDGCLNVID WD 6 865-903 -V-----------------QT-----------GMLISSMTSDEPQRCFVWDGNSVLSGSQSGELLVWD WD 7 907-945 -A-----------------KI-----------SERIQGHTGAVTCIWMNEQCSSIITGGEDRQIIFWK WD40 Template TG-----------------EC-----------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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