Input parameters:
Query = ENSP00000410677 (Len=199)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000410677, Len=199):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVMLWSLQKARPLWITNLQEDETEEMEGPQSPGQLLNPALAHSISVASCGNIFSCGAEDGKVRIFRVMGVKCEQELGFKG 80
WD40-rpts (_________________WD 1_________________) (________
Query 81 HTSGVSQVCFLPESYLLLTGGNDGKITLWDANSEVEKKQKSPTKRTHRKKPKRGTCTKQGGNTNASVTDEEEHGNILPKL 160
WD40-rpts _________WD 2________________) (___________________WD 3__________________
Query 161 NIEHGEKVNWLLGTKIKGHQNILVADQTSCISVYPLNEF 199
WD40-rpts )
3 WD40-repeats found in QUERY=ENSP00000410677 (Len=199):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 27-66 8.19 452.78 4.9e-05 20.0% 35.64
WD 2: Seg 7 72-110 9.62 511.94 7.8e-06 42.5% 51.66
WD 3: Seg 11 119-161 5.85 356.12 0.00099 5.0% 43.83
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 27-66 EGPQSPGQLLNPALAHSISVASCGNIFSCGAEDGK----VRIFR
WD 2 72-110 -CEQELGFKGHTSGVSQVCFLPESYLLLTGGNDGK----ITLWD
WD 3 119-161 -QKSPTKRTHRKKPKRGTCTKQGGNTNASVTDEEEHGNILPKLN
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT----IKVWD