WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000410677    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000410677 (Len=199)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000410677, Len=199):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVMLWSLQKARPLWITNLQEDETEEMEGPQSPGQLLNPALAHSISVASCGNIFSCGAEDGKVRIFRVMGVKCEQELGFKG 80  
WD40-rpts                                (_________________WD 1_________________)     (________

Query       81 HTSGVSQVCFLPESYLLLTGGNDGKITLWDANSEVEKKQKSPTKRTHRKKPKRGTCTKQGGNTNASVTDEEEHGNILPKL 160 
WD40-rpts      _________WD 2________________)        (___________________WD 3__________________

Query      161 NIEHGEKVNWLLGTKIKGHQNILVADQTSCISVYPLNEF 199 
WD40-rpts      )                                      



3 WD40-repeats found in QUERY=ENSP00000410677 (Len=199):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    27-66       8.19  452.78  4.9e-05       20.0%     35.64
  WD 2:  Seg  7    72-110      9.62  511.94  7.8e-06       42.5%     51.66
  WD 3:  Seg 11   119-161      5.85  356.12  0.00099        5.0%     43.83
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   27-66     EGPQSPGQLLNPALAHSISVASCGNIFSCGAEDGK----VRIFR
   WD 2   72-110    -CEQELGFKGHTSGVSQVCFLPESYLLLTGGNDGK----ITLWD
   WD 3  119-161    -QKSPTKRTHRKKPKRGTCTKQGGNTNASVTDEEEHGNILPKLN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT----IKVWD


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Last modified: 09 Jan 2019