Input parameters:
Query = ENSP00000410670 (Len=487)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000410670, Len=487):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPPNLGNAGLLGRMLDEKTPPSPSGQPEEPGMVRLVCGHHNWIAVAYTQFLVCYRLKEASGWQLVFSSPRLDWPIERLAL 80
WD40-rpts
Query 81 TARVHGGALGEHDKMVAAATGSEILLWALQAEGGGSEIGVFHLGVPVEALFFVGNQLIATSHTGRIGVWNAVTKHWQVQE 160
WD40-rpts (_________________WD 1_________________)
Query 161 VQPITSYDAAGSFLLLGCNNGSIYYVDVQKFPLRMKDNDLLVSELYRDPAEDGVTALSVYLTPKTICADNNHVRTWSVTR 240
WD40-rpts
Query 241 FRGMISTQPGSTPLASFKILALESADGHGGCSAGNDIGPYGERDDQQVFIQKVVPSASQLFVRLSSTGQRVCSVRSVDGS 320
WD40-rpts (_
Query 321 PTTAFTVLECEGSRRLGSRPRRYLLTGQANGSLAMWDLTTAMDGLGQAPAGGLTEQELMEQLEHCELAPPAPSAPSWGCL 400
WD40-rpts ___________________WD 2___________________)
Query 401 PSPSPRISLTSLHSASSNTSLSGHRGSPSPPQAEARRRGGGSFVERCQELVRSGPDLRRPPTPAPWPSSGLGTPLTPPKM 480
WD40-rpts
Query 481 KLNETSF 487
WD40-rpts
2 WD40-repeats found in QUERY=ENSP00000410670 (Len=487):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 8 111-150 4.34 294.01 0.00677 22.5% 33.62
WD 2: Seg 21 319-363 2.77 228.97 0.04991 17.5% 16.16
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 111-150 AEGGGSEIGVFHLGVPVEALFFVGNQLIATSHTGRIGVWN------
WD 2 319-363 -GSPTTAFTVLECEGSRRLGSRPRRYLLTGQANGSLAMWDLTTAMD
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD------