WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000410405 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000410405 (Len=2042) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000410405, Len=2042): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 XPMELRHLLRPRPGLDSEPGGAEAGKARHAGAVIRTLSGMARHQGPARALRYFDLTPSMAGIMVPPVQRWPGPGFTFHAW 80
WD40-rpts
Query 81 LCLHPMDTAPTPAPTRPLQRKQLYSFFTSSGSGFEAFFTAAGTLVVAVCTRKEYLTMSLPEVSFADSAWHCVAIVHVPGR 160
WD40-rpts
Query 161 RPFSQNLVHVYKDGHLVKTAPLRCPSLSEPFSSCCIGSAGYRTTTTTTGLPTPPVPATLAYTHPALTRSQSVPASTGLGW 240
WD40-rpts
Query 241 GSGLVAPLQEGSIDSTLAGTQDTRWGSPTSLEGELGAVAIFHEALQATALRTLCTLGPNETAPFKPEGELHELSTRLLLH 320
WD40-rpts
Query 321 YSPQACKNNICLDLSPSHGLDGRLTGHRVETWDVKDVVNCVGGMGALLPLLERVAAQPKEAEAGPAETHDLVGPELTSGH 400
WD40-rpts
Query 401 NTQGLVLPLGKSSEERMERNAVAAFLLMLRNFLQGHMVNQESLVQCQGPAIIGALLRKVPSWAMDMNVLMSAQLLMEQVA 480
WD40-rpts
Query 481 AEGSGPLLYLLYQHLLFNFHLWTLSDFAVRLGHIQYMSSIVREHRQKLRKKYGVQFILDALRTHYSPQRERPLAADDLRT 560
WD40-rpts
Query 561 VQTSLLGLAREFLVRSLSADDVQVTQTMLSFLAATGDDGQILRRLQQNERLPERSRQRLRLRECGLQGLVACLPEGTVSP 640
WD40-rpts
Query 641 QLCQGLYKLFLGAGSGNTAGGGGSSGTLTPASQPGTPSPLDGPRPFPAAPGRHSSSLSNVLEDGSLPEPTISGDDTSNTS 720
WD40-rpts
Query 721 NPQQTSEEELCNLLTNVLFSVTWRGVEGSDEAAWRERGQVFSVLTQLGASATLVRPPDCIKRSLLEMMLESALTDIKEAP 800
WD40-rpts
Query 801 VGVLASLTQQALWLLRLLQDFLCAEGHGNQELWSEKLFEGVCSLLDRLGAWPHLANGTADLREMAQIGLRLVLGYILLED 880
WD40-rpts
Query 881 PQLHAQAYVRLHMLLQTAVPARREEACYVLSKLEAALGRVLNTSSLESATDEAGSPLAAAAAAAAAERCSWLVPLVRTLL 960
WD40-rpts
Query 961 DRAYEPLGLQWGLPSLPPTNGSPTFFEDFQAFCATPEWRHFIDKQVQPTMSQFEMDTYAKSHDLMSGFWNACYDMLMSSG 1040
WD40-rpts
Query 1041 QRRQWERAQSRRAFQELVLEPAQRRARLEGLRYTAVLKQQATQHSMALLHWGALWRQLASPCGAWALRDTPIPRWKLSSA 1120
WD40-rpts
Query 1121 ETYSRMRLKLVPNHHFDPHLEASALRDNLGEVPLTPTEEASLPLAVTKEAKVSTPPELLQEDQLGEDELAELETPMEAAE 1200
WD40-rpts
Query 1201 LDEQREKLVLSAECQLVTVVAVVPGLLEVTTQNVYFYDGSTERVETEEGIGYDFRRPLAQLREVHLRRFNLRRSALELFF 1280
WD40-rpts
Query 1281 IDQANYFLNFPCKVGTTPVSSPSQTPRPQPGPIPPHTQVRNQVYSWLLRLRPPSQGYLSSRSPQEMLRASGLTQKWVQRE 1360
WD40-rpts
Query 1361 ISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTID 1440
WD40-rpts
Query 1441 KFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGF 1520
WD40-rpts
Query 1521 DLGCLQLTNEKVGDVVLPPWASSPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLD 1600
WD40-rpts
Query 1601 HVTDERERKALEGIISNFGQTPCQLLKEPHPTRLSAEEAAHRLARLDTNSPSIFQHLDELKAFFAEVVSDGVPLVLALVP 1680
WD40-rpts
Query 1681 HRQPHSFITQGSPDLLVTVSASGLLGTHSWLPYDRNISNYFSFSKDPTMGSHKTQRLLSGPWVPGSGVSGQALAVAPDGK 1760
WD40-rpts (___________________WD 1___
Query 1761 LLFSGGHWDGSLRVTALPRGKLLSQLSCHLDVVTCLALDTCGIYLISGSRDTTCMVWRLLHQGGLSVGLAPKPVQVLYGH 1840
WD40-rpts _______________) (_________________WD 2________________) (_________
Query 1841 GAAVSCVAISTELDMAVSGSEDGTVIIHTVRRGQFVAALRPLGATFPGPIFHLALGSEGQIVVQSSAWERPGAQVTYSLH 1920
WD40-rpts ________WD 3________________)
Query 1921 LYSVNGKLRASLPLAEQPTALTVTEDFVLLGTAQCALHILQLNTLLPAAPPLPMKVAIRSVAVTKERSHVLVGLEDGKLI 2000
WD40-rpts (__________________WD 4________________
Query 2001 VVVAGQPSEVRSSQFARKLWRSSRRISQVSSGETEYNPTEAR 2042
WD40-rpts __)
 4 WD40-repeats found in QUERY=ENSP00000410405 (Len=2042): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 26 1734-1776 3.23 247.97 0.02799 32.5% 41.61 WD 2: Seg 29 1780-1818 6.46 381.54 0.00045 40.0% 58.22 WD 3: Seg 33 1831-1869 4.91 317.32 0.00329 35.0% 53.56 WD 4: Seg 45 1962-2003 3.58 262.50 0.01792 20.0% 44.00Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1734-1776 TQRLL--SGPWVPGSGVSGQALAVAPDGKLLFSGGHWDGSLRVTA WD 2 1780-1818 -GKLL--S--QLSCHLDVVTCLALDTCGIYLISGSR-DTTCMVWR WD 3 1831-1869 -PKPV--Q--VLYGHGAAVSCVAISTELDMAVSGSE-DGTVIIHT WD 4 1962-2003 LNTLLPAA--PPLPMKVAIRSVAVTKERSHVLVGLE-DGKLIVVV WD40 Template TGECL--R--TLSGHTSGVTSVSFSPDGKRLVSGSE-DGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |