WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000410301    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000410301 (Len=92)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000410301, Len=92):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL 80  
WD40-rpts       (___________________WD 1__________________)        (_________________WD 2______

Query       81 TAGGAGGLHLWK 92  
WD40-rpts      ___________)



2 WD40-repeats found in QUERY=ENSP00000410301 (Len=92):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-44       2.84  231.85  0.04574       30.0%     49.80
  WD 2:  Seg  5    53-92       3.25  248.88  0.02722       22.5%     38.50
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    2-44     RNMALRWETNIKNGVCSLEFDRKDISMNKL-VATSLEGKFHVFD
   WD 2   53-92     -GFASVSEKAHKSTVWQVRHLPQN---RELFLTAGGAGGLHLWK

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDG---KRL-VSGSEDGTIKVWD


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Last modified: 09 Jan 2019