Input parameters:
Query = ENSP00000410301 (Len=92)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000410301, Len=92):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 XRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL 80
WD40-rpts (___________________WD 1__________________) (_________________WD 2______
Query 81 TAGGAGGLHLWK 92
WD40-rpts ___________)
2 WD40-repeats found in QUERY=ENSP00000410301 (Len=92):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 2-44 2.84 231.85 0.04574 30.0% 49.80
WD 2: Seg 5 53-92 3.25 248.88 0.02722 22.5% 38.50
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 2-44 RNMALRWETNIKNGVCSLEFDRKDISMNKL-VATSLEGKFHVFD
WD 2 53-92 -GFASVSEKAHKSTVWQVRHLPQN---RELFLTAGGAGGLHLWK
WD40 Template TGECLRTLSGHTSGVTSVSFSPDG---KRL-VSGSEDGTIKVWD