Input parameters:
Query = ENSP00000410238 (Len=128)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000410238, Len=128):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT 80
WD40-rpts (_______________WD 1_______________)(___________________WD 2___________________)
Query 81 LKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQE 128
WD40-rpts (_________________WD 3________________)
3 WD40-repeats found in QUERY=ENSP00000410238 (Len=128):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-36 6.73 392.56 0.00032 5.0% 40.13
WD 2: Seg 4 37-80 8.91 482.88 1.9e-05 25.0% 54.79
WD 3: Seg 8 86-124 7.81 437.20 8.0e-05 12.5% 56.39
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-36 --------MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYE
WD 2 37-80 KSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT
WD 3 86-124 -W----KPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICY
WD40 Template TG----ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD