WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000410238    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000410238 (Len=128)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000410238, Len=128):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT 80  
WD40-rpts      (_______________WD 1_______________)(___________________WD 2___________________)

Query       81 LKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQE 128 
WD40-rpts           (_________________WD 3________________)    



3 WD40-repeats found in QUERY=ENSP00000410238 (Len=128):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       6.73  392.56  0.00032        5.0%     40.13
  WD 2:  Seg  4    37-80       8.91  482.88  1.9e-05       25.0%     54.79
  WD 3:  Seg  8    86-124      7.81  437.20  8.0e-05       12.5%     56.39
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-36     --------MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYE
   WD 2   37-80     KSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT
   WD 3   86-124    -W----KPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICY

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019