Input parameters:
Query = ENSP00000409751 (Len=365)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000409751, Len=365):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRM 80
WD40-rpts
Query 81 VYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAAST 160
WD40-rpts
Query 161 SKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMAS 240
WD40-rpts (
Query 241 GLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRTQTHCRRERDA 320
WD40-rpts __________________________WD 1_________________________)
Query 321 EPLSSAPGLQNGSENAVPYPWWCCVTGASISCWRCEICRIQDVLE 365
WD40-rpts
1 WD40-repeats found in QUERY=ENSP00000409751 (Len=365):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 240-296 2.86 232.96 0.04423 22.5% 25.10
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 240-296 SGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDP
WD40 Template TGECLRTLSGHTS-----------------GVTSVSFSPDGKRLVSGSEDGTIKVWD