Input parameters:
Query = ENSP00000408213 (Len=261)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000408213, Len=261):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDQTILLWEWNVERNKVKALHCCRGHAGSVDSIAVDGSGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQ 80
WD40-rpts (_________________WD 1________________)
Query 81 LGLTRTPIVTLSGHMEAVSSVLWSDAEEICSASWDHTIRVWDVESGSLKSTLTGNKVFNCISYSPLCKRLASGSTDRHIR 160
WD40-rpts (________________WD 2________________) (________________WD 3______________
Query 161 LWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLS 240
WD40-rpts __) (_________________WD 4_________________)(__________________WD 5________
Query 241 GGADNKLYSYRYSPTTSHVGA 261
WD40-rpts __________)
5 WD40-repeats found in QUERY=ENSP00000408213 (Len=261):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 17-55 9.41 503.57 1.0e-05 30.0% 54.27
WD 2: Seg 6 85-122 6.95 401.63 0.00024 45.0% 52.41
WD 3: Seg 10 126-163 8.87 481.21 2.0e-05 42.5% 53.42
WD 4: Seg 14 170-209 8.70 474.07 2.5e-05 42.5% 51.02
WD 5: Seg 18 210-251 7.05 405.92 0.00021 32.5% 49.69
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 17-55 -VKA---LHCCRGHAGSVDSIAVDGS-GTKFCSGSWDKMLKIWS
WD 2 85-122 -RTP---IVTLSGHMEAVSSVLWS-D-AEEICSASWDHTIRVWD
WD 3 126-163 -GSL---KSTLTGNKV-FNCISYSPL-CKRLASGSTDRHIRLWD
WD 4 170-209 -SLV---SLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWD
WD 5 210-251 TRSCKAPLYDLAAHEDKVLSVDWTDT-GL-LLSGGADNKLYSYR
WD40 Template TGEC---LRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD