WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000408213    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000408213 (Len=261)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000408213, Len=261):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDQTILLWEWNVERNKVKALHCCRGHAGSVDSIAVDGSGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQ 80  
WD40-rpts                      (_________________WD 1________________)                         

Query       81 LGLTRTPIVTLSGHMEAVSSVLWSDAEEICSASWDHTIRVWDVESGSLKSTLTGNKVFNCISYSPLCKRLASGSTDRHIR 160 
WD40-rpts          (________________WD 2________________)   (________________WD 3______________

Query      161 LWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLS 240 
WD40-rpts      __)      (_________________WD 4_________________)(__________________WD 5________

Query      241 GGADNKLYSYRYSPTTSHVGA 261 
WD40-rpts      __________)          



5 WD40-repeats found in QUERY=ENSP00000408213 (Len=261):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    17-55       9.41  503.57  1.0e-05       30.0%     54.27
  WD 2:  Seg  6    85-122      6.95  401.63  0.00024       45.0%     52.41
  WD 3:  Seg 10   126-163      8.87  481.21  2.0e-05       42.5%     53.42
  WD 4:  Seg 14   170-209      8.70  474.07  2.5e-05       42.5%     51.02
  WD 5:  Seg 18   210-251      7.05  405.92  0.00021       32.5%     49.69
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   17-55     -VKA---LHCCRGHAGSVDSIAVDGS-GTKFCSGSWDKMLKIWS
   WD 2   85-122    -RTP---IVTLSGHMEAVSSVLWS-D-AEEICSASWDHTIRVWD
   WD 3  126-163    -GSL---KSTLTGNKV-FNCISYSPL-CKRLASGSTDRHIRLWD
   WD 4  170-209    -SLV---SLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWD
   WD 5  210-251    TRSCKAPLYDLAAHEDKVLSVDWTDT-GL-LLSGGADNKLYSYR

   WD40 Template    TGEC---LRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019