WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000408087    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000408087 (Len=160)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000408087, Len=160):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAVKWTGGHSSPVLCLNASKEGLLASGAEGGDLTAWGEDGTPLGHTRFQGADDVTSVLFSPSCPTKLYASHGETISVLDV 80  
WD40-rpts         (______________WD 1______________)   (_________________WD 2________________) 

Query       81 RSLKDSLDHFHVNEEEINCLSLNQTENLLASADDSGAIKILDLENKKVIRSLKRHSNICSSVAFRPQRPQSLVSCGLDMQ 160 
WD40-rpts         (_________________WD 3________________)   (_______________WD 4______________)



4 WD40-repeats found in QUERY=ENSP00000408087 (Len=160):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-37       7.64  430.26  9.9e-05       30.0%     43.27
  WD 2:  Seg  4    41-79       9.09  490.29  1.5e-05       32.5%     55.89
  WD 3:  Seg  8    84-122      8.69  473.61  2.6e-05       20.0%     49.61
  WD 4:  Seg 11   126-160      4.01  280.16  0.01040       27.5%     42.93
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    4-37     ----KWTGGHSSPVLCLNASKE-G-LLASGAEGGDLTAWG
   WD 2   41-79     TPLGHTRFQGADDVTSVLFSPS-CPTKLYASHGETISVLD
   WD 3   84-122    KDSLDHFHVNEEEINCLSLNQT-ENLLASADDSGAIKILD
   WD 4  126-160    KKVIRSLKRHSNICSSVAFRPQRPQSLVSCGLDM-----Q

   WD40 Template    GECLRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019