Input parameters:
Query = ENSP00000408087 (Len=160)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000408087, Len=160):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAVKWTGGHSSPVLCLNASKEGLLASGAEGGDLTAWGEDGTPLGHTRFQGADDVTSVLFSPSCPTKLYASHGETISVLDV 80
WD40-rpts (______________WD 1______________) (_________________WD 2________________)
Query 81 RSLKDSLDHFHVNEEEINCLSLNQTENLLASADDSGAIKILDLENKKVIRSLKRHSNICSSVAFRPQRPQSLVSCGLDMQ 160
WD40-rpts (_________________WD 3________________) (_______________WD 4______________)
4 WD40-repeats found in QUERY=ENSP00000408087 (Len=160):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 4-37 7.64 430.26 9.9e-05 30.0% 43.27
WD 2: Seg 4 41-79 9.09 490.29 1.5e-05 32.5% 55.89
WD 3: Seg 8 84-122 8.69 473.61 2.6e-05 20.0% 49.61
WD 4: Seg 11 126-160 4.01 280.16 0.01040 27.5% 42.93
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 4-37 ----KWTGGHSSPVLCLNASKE-G-LLASGAEGGDLTAWG
WD 2 41-79 TPLGHTRFQGADDVTSVLFSPS-CPTKLYASHGETISVLD
WD 3 84-122 KDSLDHFHVNEEEINCLSLNQT-ENLLASADDSGAIKILD
WD 4 126-160 KKVIRSLKRHSNICSSVAFRPQRPQSLVSCGLDM-----Q
WD40 Template GECLRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD