WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000407835    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000407835 (Len=104)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000407835, Len=104):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFHETFDCPIKII 80  
WD40-rpts                             (_________________WD 1________________)(_________________

Query       81 AVHPHFVRSSCKQFVTGGKKVSAV 104 
WD40-rpts      WD 2_________________)  



2 WD40-repeats found in QUERY=ENSP00000407835 (Len=104):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    24-62       8.36  459.88  3.9e-05       20.0%     53.52
  WD 2:  Seg  7    63-102      3.34  252.72  0.02419        7.5%     22.62
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   24-62     -GNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFG
   WD 2   63-102    LYSGEEFHETFDCPIKIIAVHPHFVRSSCKQFVTGGKKVS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019