WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000406114    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000406114 (Len=181)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000406114, Len=181):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENPQDIFSSNGGCLSDIVIEKYLVESKESVSHVQLACSMQDCAFPLDGTELCIWNTKDPSHQLLILRGHHQPITAMAFG 80  
WD40-rpts                      (_________________WD 1_________________)    (_________________WD

Query       81 NKVNPLLICSASLDYVIMWNLDECREKVLQGLVPRGTVMGSLLGKVLCLQLSLDDHVVAVCAGNKIFMLDIEHILFSVYS 160 
WD40-rpts       2_________________)         (__________________WD 3_________________)          

Query      161 LMQKAGSWSPGVLTASFGSSV 181 
WD40-rpts                           



3 WD40-repeats found in QUERY=ENSP00000406114 (Len=181):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    17-56       8.33  458.66  4.1e-05       10.0%     47.10
  WD 2:  Seg  6    61-100      5.94  360.22  0.00087       25.0%     43.43
  WD 3:  Seg 10   110-150      5.42  338.37  0.00171       15.0%     44.41
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   17-56     DIVIEK--YLVESKESVSHVQLA--CSMQDCAFPLDGTELCIWN
   WD 2   61-100    -SHQLL--ILRGHHQPITAMAFGNKVNPLLICSASLD-YVIMWN
   WD 3  110-150    QGLVPRGTVMGSLLGKVLCLQLS--LDDHVVAVCAGNKIF-MLD

   WD40 Template    TGECLR--TLSGHTSGVTSVSFS--PDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019