Input parameters:
Query = ENSP00000406114 (Len=181)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000406114, Len=181):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MENPQDIFSSNGGCLSDIVIEKYLVESKESVSHVQLACSMQDCAFPLDGTELCIWNTKDPSHQLLILRGHHQPITAMAFG 80
WD40-rpts (_________________WD 1_________________) (_________________WD
Query 81 NKVNPLLICSASLDYVIMWNLDECREKVLQGLVPRGTVMGSLLGKVLCLQLSLDDHVVAVCAGNKIFMLDIEHILFSVYS 160
WD40-rpts 2_________________) (__________________WD 3_________________)
Query 161 LMQKAGSWSPGVLTASFGSSV 181
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000406114 (Len=181):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 17-56 8.33 458.66 4.1e-05 10.0% 47.10
WD 2: Seg 6 61-100 5.94 360.22 0.00087 25.0% 43.43
WD 3: Seg 10 110-150 5.42 338.37 0.00171 15.0% 44.41
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 17-56 DIVIEK--YLVESKESVSHVQLA--CSMQDCAFPLDGTELCIWN
WD 2 61-100 -SHQLL--ILRGHHQPITAMAFGNKVNPLLICSASLD-YVIMWN
WD 3 110-150 QGLVPRGTVMGSLLGKVLCLQLS--LDDHVVAVCAGNKIF-MLD
WD40 Template TGECLR--TLSGHTSGVTSVSFS--PDGKRLVSGSEDGTIKVWD