Input parameters:
Query = ENSP00000405369 (Len=230)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000405369, Len=230):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 TLFHGKRVYAVAISGSTHHVYTCGSGYIRVWDESALHAGEKAPRAQLDLQHPQDRVVTCKLFPDERSLITGGASQAVTLW 80
WD40-rpts (_____________WD 1_____________) (_________________WD 2________________
Query 81 DLAPTPQVRAQLTSTGPTCYSLAVSSDAHICLACFHGFVEIWDLQNQILIRKHEVPVYGSRCVDITGNIFWTGGEDTILY 160
WD40-rpts )(__________________WD 3__________________)(_________________WD 4_______________
Query 161 SWDLRSYQRLHQHNLQNEILSITHDPGEEWVLAGLRTSDIVFLHTRRNEQFKALMKKYTRHHSLKFASCG 230
WD40-rpts __)(__________________WD 5_________________)
5 WD40-repeats found in QUERY=ENSP00000405369 (Len=230):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-32 6.39 378.63 0.00049 25.0% 43.10
WD 2: Seg 4 43-81 8.65 471.81 2.7e-05 20.0% 53.04
WD 3: Seg 8 82-123 6.95 401.90 0.00024 17.5% 56.64
WD 4: Seg 12 124-163 7.28 415.26 0.00016 17.5% 49.09
WD 5: Seg 16 164-204 7.26 414.49 0.00016 12.5% 52.87
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-32 T----------L-FHGKRVYAVAISGSTHHVYTCG-SGYIRVWD
WD 2 43-81 -P---RAQLDLQ-HPQDRVVTCKLFPDERSLITGGASQAVTLWD
WD 3 82-123 LAPTPQVRAQLT-STGPTCYSLAVSSDAH-ICLACFHGFVEIWD
WD 4 124-163 LQ---NQILIRK-HEVPVYGSRCVDITGNIFWTGGEDTILYSWD
WD 5 164-204 LR---SYQRLHQHNLQNEILSITHDPGEEWVLAGLRTSDIVFLH
WD40 Template TG---ECLRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD