WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000405369    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000405369 (Len=230)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000405369, Len=230):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 TLFHGKRVYAVAISGSTHHVYTCGSGYIRVWDESALHAGEKAPRAQLDLQHPQDRVVTCKLFPDERSLITGGASQAVTLW 80  
WD40-rpts      (_____________WD 1_____________)          (_________________WD 2________________

Query       81 DLAPTPQVRAQLTSTGPTCYSLAVSSDAHICLACFHGFVEIWDLQNQILIRKHEVPVYGSRCVDITGNIFWTGGEDTILY 160 
WD40-rpts      )(__________________WD 3__________________)(_________________WD 4_______________

Query      161 SWDLRSYQRLHQHNLQNEILSITHDPGEEWVLAGLRTSDIVFLHTRRNEQFKALMKKYTRHHSLKFASCG 230 
WD40-rpts      __)(__________________WD 5_________________)                          



5 WD40-repeats found in QUERY=ENSP00000405369 (Len=230):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-32       6.39  378.63  0.00049       25.0%     43.10
  WD 2:  Seg  4    43-81       8.65  471.81  2.7e-05       20.0%     53.04
  WD 3:  Seg  8    82-123      6.95  401.90  0.00024       17.5%     56.64
  WD 4:  Seg 12   124-163      7.28  415.26  0.00016       17.5%     49.09
  WD 5:  Seg 16   164-204      7.26  414.49  0.00016       12.5%     52.87
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-32     T----------L-FHGKRVYAVAISGSTHHVYTCG-SGYIRVWD
   WD 2   43-81     -P---RAQLDLQ-HPQDRVVTCKLFPDERSLITGGASQAVTLWD
   WD 3   82-123    LAPTPQVRAQLT-STGPTCYSLAVSSDAH-ICLACFHGFVEIWD
   WD 4  124-163    LQ---NQILIRK-HEVPVYGSRCVDITGNIFWTGGEDTILYSWD
   WD 5  164-204    LR---SYQRLHQHNLQNEILSITHDPGEEWVLAGLRTSDIVFLH

   WD40 Template    TG---ECLRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019