WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000405012 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000405012 (Len=2912) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000405012, Len=2912): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSPRLIPLWKDLKLLLNDTINKSKQPSEDPKNCLIVLSDRSQVLFKESRYPQNMPCVCYYFSDAHFFASLSWVTSNTKE 80
WD40-rpts
Query 81 IQAVAWMKSKTEDMVEKRTFSMTERLPPIQSMVHAGSFHILVVYCGDLILRLFGDHFRAFKPLGKVPCRFNISCLCYDPE 160
WD40-rpts
Query 161 MKMLLSGILGAVVTWVIELGGTGLQIAHMVSMPGDELVQDIVLNGPSGSLLALCETVVRVLMHQGKGQLGEVKRFTSTSS 240
WD40-rpts (________________
Query 241 GSSITCCFTCFDQGFLYAGNQAGEIQVWSLQQGHPLHSFQAHQSGVICIRSRPEAHTLLTAGSDSLIKEWNLTSGSLLRR 320
WD40-rpts ____WD 1____________________) (_________________WD 2________________)
Query 321 LELGEELYRLQFIDSITFFCQTAHSFSLHRLPCFYSLFNVCGSAPQQLRRVCCGNNWFRILCTTEDGLLRFVSPVTGDLL 400
WD40-rpts (________________
Query 401 VITWPFSILDQAVDWAYDPGKEELFVATGSSEVLVFDTTRCPCPAKYLLGTSPNSQDFVQCLAYGHFNLGRGLEGLIFSG 480
WD40-rpts ________WD 3________________________)
Query 481 HQSGVIRVLSQHSCARLEKFMHFGAVLALSTLSGGIFGGQGNSLLCSYGMDDYVHLSEAVLDGVKVQLRPLASILSSCHL 560
WD40-rpts
Query 561 THLILLPKSVGAITETNCLRLWKFHDFLSSGSQNGLKFIETLPLHLCAITSFDVCLSLSLFVTGSADGSVRIWDFHGRLI 640
WD40-rpts (_______________________WD 4______________________)
Query 641 GILDSSLHFGPVCFANDRGDLLVTFNQSLYLVSCLKLLPPALLTRLSFMSISDEVLEVPKPFIPSFFFSFETMFVPKYIY 720
WD40-rpts
Query 721 PGQAQQKLVGLEKLVNNRAIAFDHSVPHVIEEDEEGSPVLLRSSMHYSLQDMEDWMQVSKRYQCHYVLPPQLQLTSWDGL 800
WD40-rpts
Query 801 NPYQILRYYFGHGREWLFAPDCYIPNSVIRARLWPEGTPIYLQCNLHAPQRELEWDRSQEFFFWHSRVRAISNTEYPKNK 880
WD40-rpts
Query 881 EEDEHFLEMRLSKDVTYSVLTDGANRSWLGRKMSEITINSMIETMLNIMVHASLLKYQCCVGALGQIFASYQVSPALRSE 960
WD40-rpts
Query 961 TARRLLNDTTNSNPLIRELAWEGLKRLGMITHLFAMPLAQGLMDKDERVRIKTLSLMAEIGIHSRTSLLQLTQKQETFRE 1040
WD40-rpts
Query 1041 MQQQMIGEEPLDHLLGMRATDLQILSTQVEQRLNENLTLSHRDEKPAFSLDVSMPSELKSSLKPPTVSEESEVAIKPSKG 1120
WD40-rpts
Query 1121 QRRGQAGVKKHSQKWLRGLKKTKERDSKQMSTEPGLLEDESGTEAAPIEMEEASVYSQWSSSTSVIKLSKDVDSQEKDIS 1200
WD40-rpts
Query 1201 KDHIALTLKRLQKIRDKRDKKATAQKLKKKHKKKGKEAKVINEETTPPVMEQPVTKKVKIQGRGASGISGRRSTAGDGSS 1280
WD40-rpts
Query 1281 WRDDLCRLMALRISGSQTKMSENLNAELVTFAQEMLVDRHPSWELFQEICPLLKKESKVLLEDLDWDVVPPEKKPIFIQE 1360
WD40-rpts
Query 1361 GAIREDMIQGVTQEVIRHKEVMPREEEQAQKKARDMLGLEETQVILKKGKKVIFLEPGNVTMGKEISKKEEKKTFQKSPK 1440
WD40-rpts
Query 1441 QGRKAVQKERKVGKIKREMTKEERDMSEEVEEMATLEEKVVKQEGKLVMIERTPSWQDWKKAWDEWKQVHGETRKSWKAW 1520
WD40-rpts
Query 1521 KEEWEKRLLQEEEKLHQAGEKLSPEEEMLQEDKKLKWEEWKQVWENMLSSKSKEQQYKDEEEVTLEEEVSREGEEKEQQV 1600
WD40-rpts
Query 1601 TEEQRHIQEEHKWARIHRKRARAEKKRAQEERKLAQEEEKLAQEERQLAQEERKLAQAYVKITQDDREMAQAEGKFAQKE 1680
WD40-rpts
Query 1681 ETLAQRGEKLSQEAEKLAQKRKKLAKKWEKVAREEEKLAKKGGKLAEVKNILAQKVEELPQREQNLDWQEKELAQELEEL 1760
WD40-rpts
Query 1761 EWDMEELSWKEEELNQEEGKLVEEKKKLAEEEEALAWQREKLSEEETKLAQEEELLIQEKEKLAQHKEKMPEEEERLGRK 1840
WD40-rpts
Query 1841 REQLIEKKMKLAQKRERWINSMEELTKNKMILYQKKNLAQEKKNLAQEKEKLAQRKENLLYNKERLTHSKKQLVQVKNKL 1920
WD40-rpts
Query 1921 GMFNKILAQVEEKLTQEKETVIKKKEKLAETEKKLVQVEDSLAKKQEKLAQEKMKLALEKAMVQGKKRLRGELDIAKEEK 2000
WD40-rpts
Query 2001 ALNLEMKRLAEEKMRLVEGKETLSKGETPETSRQRKMTQVEQELFERKLSLEEKILLHEDRILAMEESEIAKGKLEFTRG 2080
WD40-rpts
Query 2081 QRIFVQGQRKLAKASRKLIKKRESLSKEPAKLNKILKALQKLTRDERKLTQEEIKMTKMKRALFVKERRLSIEQSKLDIK 2160
WD40-rpts
Query 2161 EWDFSEKRSELTKDEKKLARKQRKLANKMRRMINKEEKMTEEESKLARKHSEVILDDEEEGGIEEEEVIPFLKRRWRKRK 2240
WD40-rpts
Query 2241 EAKRGDKPKEKFSSQVDEVESEEHFSEEMESLLDELEKQESLSSEEEEEREEEEEREEEEVREEEEERKEEEEGEEKQVE 2320
WD40-rpts
Query 2321 KEEEEKKKKKKEKKKEEVQEKEEVFEEKEEIMSEEETESLSDEEEEEESCSLEEEVDREKEILKKEKQFKLQEQRRKSLR 2400
WD40-rpts
Query 2401 GRERVLSILRGVPHGKGRAIRLGVLKSPLKKLMSTALEMKEKTPVPVPEKQISWEDKKATVVEIPRKFLGTMDKEREVMG 2480
WD40-rpts
Query 2481 KYEPIPPHVLGTVLESQAQDLKTPFMSHILRRTVEAEELQHKPLGAWWKWFLQHPPLMGQTEVQLPLSQIPAKEQHADVS 2560
WD40-rpts
Query 2561 LSDVEWIRHVLERMEAGEQLSRDGFHRLCQLLKDLASKGNLEWLHLAKHEAIVYRHRQALESQDTRISSRQSMSPKYLKV 2640
WD40-rpts
Query 2641 IPPIKAKEKESWPKPLAVPTQKSPLATKRIPDPRAKNWHLLGEPYRSERAQQISIAHKEMEMQYFYPATRDIFPSAHASV 2720
WD40-rpts
Query 2721 EKQTLALMFQKDFWDFKDKRRFPKLPKLEKKTQPISKKKEELPLWETFVALYHVLRMLQQRYPKDSTAWMEQFYQLMDLY 2800
WD40-rpts
Query 2801 QLKSPRIQKLLQELLMREEPQPQEIIYEEALKATELVPGERLFCCLFCGSSHTPRSPQEFQGAVPLPWQNCVRTILPVGI 2880
WD40-rpts
Query 2881 ARYGILELAWKSLPEADLHLTKALTHTVAPTL 2912
WD40-rpts
 4 WD40-repeats found in QUERY=ENSP00000405012 (Len=2912): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 224-269 3.15 244.61 0.03102 27.5% 32.96 WD 2: Seg 10 273-311 3.06 240.97 0.03466 27.5% 15.83 WD 3: Seg 13 384-437 2.77 229.23 0.04953 20.0% 42.32 WD 4: Seg 23 584-634 6.41 379.57 0.00048 32.5% 23.17Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 224-269 QGKGQLGEVKRF-----------TSTSSGSSITCCFTCF--------------DQGFLY---AGNQAGEIQVWS WD 2 273-311 -GH------PLH-----------SFQAHQSGVICIRSRP--------------EAH---TLLTAGSDSLIKEWN WD 3 384-437 TED------GLL-----------RFVSPVTGDLLVITWPFSILDQAVDWAYDPGKEELF---VATGSSEVLVFD WD 4 584-634 FHD------FLSSGSQNGLKFIETLPLHLCAITSFDVCL--------------SLSLFV---TGSADGSVRIWD WD40 Template TGE------CLR-----------TLSGHTSGVTSVSFSP--------------DGKRLV---SGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |