Input parameters:
Query = ENSP00000404791 (Len=135)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000404791, Len=135):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MATGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDK 80
WD40-rpts (_________________WD 1________________) (__________________WD 2____
Query 81 QIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDG 135
WD40-rpts ______________)
2 WD40-repeats found in QUERY=ENSP00000404791 (Len=135):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 12-50 9.28 498.00 1.2e-05 22.5% 50.81
WD 2: Seg 5 54-95 7.17 410.91 0.00018 37.5% 57.73
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 12-50 LKLEATL-NVHDGCVNTICWND--TGEYILSGSDDTKLVISN
WD 2 54-95 RKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTN
WD40 Template GECLRTL-SGHTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD