Input parameters:
Query = ENSP00000403324 (Len=130)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000403324, Len=130):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT 80
WD40-rpts (_______________WD 1_______________)(___________________WD 2___________________)
Query 81 LKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQEND 130
WD40-rpts (_________________WD 3________________)
3 WD40-repeats found in QUERY=ENSP00000403324 (Len=130):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-36 6.56 385.63 0.00040 5.0% 38.79
WD 2: Seg 4 37-80 8.93 483.74 1.9e-05 25.0% 54.17
WD 3: Seg 8 86-124 7.85 438.73 7.6e-05 12.5% 56.58
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-36 --------MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYE
WD 2 37-80 KSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT
WD 3 86-124 -W----KPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICY
WD40 Template TG----ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD