WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000403324    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000403324 (Len=130)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000403324, Len=130):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT 80  
WD40-rpts      (_______________WD 1_______________)(___________________WD 2___________________)

Query       81 LKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQEND 130 
WD40-rpts           (_________________WD 3________________)      



3 WD40-repeats found in QUERY=ENSP00000403324 (Len=130):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       6.56  385.63  0.00040        5.0%     38.79
  WD 2:  Seg  4    37-80       8.93  483.74  1.9e-05       25.0%     54.17
  WD 3:  Seg  8    86-124      7.85  438.73  7.6e-05       12.5%     56.58
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-36     --------MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYE
   WD 2   37-80     KSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT
   WD 3   86-124    -W----KPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICY

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019