Input parameters:
Query = ENSP00000402989 (Len=185)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000402989, Len=185):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVE 80
WD40-rpts (_____________________________________
Query 81 QAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSL 160
WD40-rpts __________WD 1______________________________________________)
Query 161 ELLVVDEADLLFSFGFEEELKSLLW 185
WD40-rpts
1 WD40-repeats found in QUERY=ENSP00000402989 (Len=185):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 43-141 3.03 239.91 0.03580 27.5% 38.42
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 43-141 EGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGT
WD40 Template TGECLRTLSGHTSG--------------------------VTSVSFSPD----------------------GKRLVSGSEDG-----------TIKVWD