WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000401889    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000401889 (Len=334)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000401889, Len=334):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80  
WD40-rpts      (_______________WD 1______________)_________________WD 2________________)   (___

Query       81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160 
WD40-rpts      ______________WD 3________________)   (_________________WD 4________________)   

Query      161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 240 
WD40-rpts      (_________________WD 5________________)   (_________________WD 6________________

Query      241 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320 
WD40-rpts      _)   (__________________WD 7__________________)   (__________________WD 8_______

Query      321 LENDKTIKLWKSDC 334 
WD40-rpts      __________)   



8 WD40-repeats found in QUERY=ENSP00000401889 (Len=334):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-35       5.14  327.01  0.00244        7.5%      4.13
  WD 2:  Seg  2    35-73       9.32  499.81  1.1e-05       47.5%     51.95
  WD 3:  Seg  6    77-115     10.90  565.08  1.5e-06       45.0%     57.48
  WD 4:  Seg 10   119-157     10.93  566.33  1.4e-06       42.5%     56.82
  WD 5:  Seg 14   161-199     10.93  565.96  1.5e-06       45.0%     56.07
  WD 6:  Seg 18   203-242      9.49  506.70  9.2e-06       42.5%     53.30
  WD 7:  Seg 22   246-287      8.85  480.33  2.1e-05       37.5%     57.07
  WD 8:  Seg 26   291-331      8.44  463.37  3.5e-05       35.0%     51.31
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-35     ----MAT-EEKKPETEAARAQ---PTPSSSATQS--KPTPVKPNY
   WD 2   35-73     YALKFTL-AGHTKAVSSVKFS---PNGEWLASSS--ADKLIKIWG
   WD 3   77-115    GKFEKTI-SGHKLGISDVAWS---SDSNLLVSAS--DDKTLKIWD
   WD 4  119-157    GKCLKTL-KGHSNYVFCCNFN---PQSNLIVSGS--FDESVRIWD
   WD 5  161-199    GKCLKTL-PAHSDPVSAVHFN---RDGSLIVSSS--YDGLCRIWD
   WD 6  203-242    GQCLKTLIDDDNPPVSFVKFS---PNGKYILAAT--LDNTLKLWD
   WD 7  246-287    GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGS--EDNLVYIWN
   WD 8  291-331    KEIVQKL-QGHTDVVISTACH---PTENIIASAALENDKTIKLWK

   WD40 Template    GECLRTL-SGHTSGVTSVSFS---PDGKRLVSGS--EDGTIKVWD


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Last modified: 09 Jan 2019