WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000400855 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000400855 (Len=2400) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000400855, Len=2400): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MHLHQVLTGAVNPGDNCYSVGSVGDVPFTAYGSGCDIVILANDFECVQIIPGAKHGNIQVSCVECSNQQGRIAASYGNAV 80
WD40-rpts (__________________WD 1______________
Query 81 CIFEPLGINSHKRNCQLKCQWLKTGQFFLSSVTYNLAWDPQDNRLLTATDSIQLWAPPGDDILEEEEEIDNTVPPVLNDW 160
WD40-rpts ____) (_____________WD 2_____________) (____________
Query 161 KCVWQCKTSVSVHLMEWSPDGEYFATAGKDDCLLKVWYPMTGWKSSIIPQDHHEVKRRQSSTQFSFVYLAHPRAVTGFSW 240
WD40-rpts ___________WD 3______________________) (__________
Query 241 RKTSKYMPRGSVCNVLLTSCHDGVCRLWAETLLPEDCLLGEQICETTTSSIASSLSHAGRHKDRIQHALETIHHLKNLRK 320
WD40-rpts _______WD 4_________________)
Query 321 GQRRSSVLVTHAELMPDQTAMHEVQRHISHHANALCHFHIAASINPATDIPNVLVGTAFNVDDGNGGFVVHWLNNKEFHF 400
WD40-rpts
Query 401 TSSTEVFMHQLRKLSDKQVDHENDDADREDEEHSQEDRERGLHMKLDHDLSLDRESEAGTGSSEHEDGEREGSPRTYSRL 480
WD40-rpts
Query 481 SVPMPLPTVLLDRKIETLLTEWNKNPDMLFTIHPVDGTFLVWHVKYLDEYNPGIFRQVQVSFSSRIPVAFPSGDASSLSK 560
WD40-rpts
Query 561 NIMMYACINATKDSHHTLLHQEGMSVGSPHGSQPHSRSHSTHMNILAPTVMMISKHIDGSLNQWAVTFADKSAFTTVLTV 640
WD40-rpts
Query 641 SHKFRYCGHRFHLNDLACHSVLPLLLTSSHHNALLTPELDCQWDSDNKLSRLMDPVKHIKGSSKQPLRNAATRTFHDPNA 720
WD40-rpts
Query 721 IYSELILWRVDPIGPLSYTGGVSELARINSLHTSAFSNVAWLPTLIPSYCLGTYCNSASACFVASDGKNLRLYQAVVDAR 800
WD40-rpts
Query 801 KLLDELSDPESSKLIGEVFNIVSQQSTARPGCIIELDAITNQCGSNTQLLHVFQEDFIIGYKPHKEDMEKKETEIFFQPS 880
WD40-rpts
Query 881 QGYRPPPFSEKFFLVVIEKDSNNNSILHMWHLHLKSVQACLGRDTLDECGLRYLLAMRLHTCLLTSLPPLYRVQLLHQGV 960
WD40-rpts
Query 961 STCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRNINTLRRCIEKVAKASFQRNNDALDAALFYLSMKKK 1040
WD40-rpts
Query 1041 AVVWGLFRSQHDEKMTTFFSHNFNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIAR 1120
WD40-rpts
Query 1121 LYESEFETSSTYISILNQKILGCQKDGSGFSCKRLHPDPFLRSLAYWVMKDYTRALDTLLEQTPKEDDEHQVIIKSCNPV 1200
WD40-rpts
Query 1201 AFSFYNYLRTHPLLIRRNLASPEGTLATLGLKTEKNFVDKINLIERKLFFTTANAHFKVGCPVLALEVLSKIPKVTKTSA 1280
WD40-rpts
Query 1281 LSAKKDQPDFISHRMDDVPSHSKALSDGNGSSGIEWSNVTSSQYDWSQPIVKVDEEPLNLDWGEDHDSALDEEEDDAVGL 1360
WD40-rpts
Query 1361 VMKSTDAREKDKQSDQKASDPNMLLTPQEEDDPEGDTEVDVIAEQLKFRACLKILMTELRTLATGYEVDGGKLRFQLYNW 1440
WD40-rpts
Query 1441 LEKEIAALHEICNHESVIKEYSSKTYSKVESDLLDQEEMVDKPDIGSYERHQIERRRLQAKREHAERRKSWLQKNQDLLR 1520
WD40-rpts
Query 1521 VFLSYCSLHGAQGGGLASVRMELKFLLQESQQETTVKQLQSPLPLPTTLPLLSASIASTKTVIANPVLYLNNHIHDILYT 1600
WD40-rpts
Query 1601 IVQMKTPPHPSIEDVKVHTLHSLAASLSASIYQALCDSHSYSQTEGNQFTGMAYQGLLLSDRRRLRTESIEEHATPNSSP 1680
WD40-rpts
Query 1681 AQWPGVSSLINLLSSAQDEDQPKLNILLCEAVVAVYLSLLIHALATNSSSELFRLAAHPLNNRMWAAVFGGGVKLVVKPR 1760
WD40-rpts
Query 1761 RQSENISAPPVLSEDIDKHRRRFNMRMLVPGRPVKDATPPPVPAERPSYKEKFIPPELSMWDYFVAKPFLPLSDSGVIYD 1840
WD40-rpts
Query 1841 SDESIHSDEEDDAFFSDTQIQEHQDPNSYSWALLHLTMVKLALHNVKNFFPIAGLEFSELPVTSPLGIAVIKNLENWEQI 1920
WD40-rpts
Query 1921 LQEKMDQFEGPPPNYINTYPTDLSVGAGPAILRNKAMLEPENTPFKSRDSSAFPVKRLWHFLVKQEVLQETFIRYIFTKK 2000
WD40-rpts
Query 2001 RKQSEVEADLGYPGGKAKVIHKESDMIMAFSVNKANCNEIVLASTHDVQELDVTSLLACQSYIWIGEEYDRESKSSDDVD 2080
WD40-rpts
Query 2081 YRGSTTTLYQPSATSYSASQVHPPSSLPWLGTGQTSTGASVLMKRNLHNVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQ 2160
WD40-rpts (______________WD 5_____________)(____
Query 2161 QLVCFRQAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVNQTASNPKPYMSWQCHSKATSDFAFITSSSLVATSGHSNDN 2240
WD40-rpts _______________WD 6__________________)(______________________WD 7_______________
Query 2241 RNVCLWDTLISPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIRQRQLIHTFQAHDSAIKALALDPYEEY 2320
WD40-rpts ______) (_______________WD 8_______________) (_________________WD 9___
Query 2321 FTTGSAEGNIKVWRLTGHGLIHSFKSEHAKQSIFRNIGAGVMQIDIIQGNRLFSCGADGTLKTRVLPNAFNIPNRILDIL 2400
WD40-rpts _____________)
 9 WD40-repeats found in QUERY=ENSP00000400855 (Len=2400): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 44-85 2.85 232.51 0.04484 20.0% 50.19 WD 2: Seg 9 105-136 3.37 253.78 0.02342 15.0% 31.12 WD 3: Seg 13 148-198 4.30 292.37 0.00713 25.0% 22.85 WD 4: Seg 18 230-269 3.17 245.73 0.02998 12.5% 18.48 WD 5: Seg 54 2123-2155 5.12 326.11 0.00251 12.5% 44.90 WD 6: Seg 57 2156-2198 5.79 353.91 0.00106 15.0% 55.86 WD 7: Seg 61 2199-2247 4.38 295.74 0.00642 10.0% 50.86 WD 8: Seg 65 2257-2292 6.54 384.73 0.00041 22.5% 48.53 WD 9: Seg 68 2296-2334 7.94 442.46 6.8e-05 27.5% 51.34Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 44-85 -F------ECVQIIP----------GAKHGNIQVSCVECSNQQGRIAA-SY---GNAVCIFEP WD 2 105-136 ------------GQF----------FLSSV---TYNLAWDPQDNRLLT-AT---D--SIQLWA WD 3 148-198 EI------DNTVPPVLNDWKCVWQCKTSVS---VHLMEWSPDGEYFATAGK---DDCLLKVWY WD 4 230-269 AH------PRAVTGF----------SWRKT---SKYMPRGSVCNVLLT-SC---HDGVCRLWA WD 5 2123-2155 -------------MK----------RNLHN---VKRMTSHPVHQYYLT-GA---QDGSVRMFE WD 6 2156-2198 WT---RPQQLVCFRQ----------AGNAR---VTRLYFNSQGNKCGV-AD---GEGFLSIWQ WD 7 2199-2247 VNQTASNPKPYMSWQ----------CHSKA---TSDFAFITSSSLVAT-SGHSNDNRNVCLWD WD 8 2257-2292 ----------IHGFT----------CHDHG---ATVLQYAPKQQLLIS-GG---RKGHVCIFD WD 9 2296-2334 -R------QLIHTFQ----------AHDSA---IKALALDPYEEYFTT-GS---AEGNIKVWR WD40 Template TG------ECLRTLS----------GHTSG---VTSVSFSPDGKRLVS-GS---EDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |