WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000400728    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000400728 (Len=97)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000400728, Len=97):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEEENIRVVRCGGSELNFRRAVFSADSKYIFCVSGDFVKVYSTVTEECVHILHGHRNLVTGIQLNPNNHLQSQPTWKLL 80  
WD40-rpts          (_________________WD 1________________)   (_________________WD 2____________

Query       81 IKDGFALPFTFIPKEIK 97  
WD40-rpts      ____)            



2 WD40-repeats found in QUERY=ENSP00000400728 (Len=97):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-43       7.27  414.90  0.00016       22.5%     51.61
  WD 2:  Seg  5    47-85       8.02  445.93  6.1e-05       25.0%     37.16
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    5-43     ENIRVVRCGGSELNFRRAVFSADSKYIFCVSGD-FVKVYS
   WD 2   47-85     -EECVHILHGHRNLVTGIQLNPNNHLQSQPTWKLLIKDGF

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019