WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000400321    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000400321 (Len=278)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000400321, Len=278):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTE 80  
WD40-rpts                       (________________WD 1________________)                         

Query       81 AGVADLTWVGERGILVASDSAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ 160 
WD40-rpts                  (_________________WD 2_________________)(____________________WD 3___

Query      161 SEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDAT 240 
WD40-rpts      ________________)   (_________________WD 4_________________)(__________________W

Query      241 WSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE 278 
WD40-rpts      D 5__________________)                



5 WD40-repeats found in QUERY=ENSP00000400321 (Len=278):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    18-55       5.73  351.34  0.00115       12.5%     34.88
  WD 2:  Seg  7    93-132      8.72  474.71  2.5e-05       37.5%     55.67
  WD 3:  Seg 11   133-177      6.89  399.38  0.00026       27.5%     53.54
  WD 4:  Seg 15   181-220      8.48  465.00  3.4e-05       35.0%     52.14
  WD 5:  Seg 19   221-262      6.58  386.32  0.00039       17.5%     55.80
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   18-55     NL----P-PNAPACMERQLEAARYRS-DGA--LLLGASSLSGRCWA
   WD 2   93-132    -G----ILVASDSAHAAQVTCVAASPHKDS-VFLSCSEDNRILLWD
   WD 3  133-177    TRCPKPASQIGCSAPGYLPTSLAWHPQQSE-VFVFGDENGTVSLVD
   WD 4  181-220    -T----SCVLSSAVHSQCVTGLVFSP-HSVPFLASLSEDCSLAVLD
   WD 5  221-262    SS---LSELFRSQAHRDFVRDATWSP-LNHSLLTTVGWDHQVVHHV

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSP-DGK-RLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019