Input parameters:
Query = ENSP00000400321 (Len=278)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000400321, Len=278):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTE 80
WD40-rpts (________________WD 1________________)
Query 81 AGVADLTWVGERGILVASDSAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ 160
WD40-rpts (_________________WD 2_________________)(____________________WD 3___
Query 161 SEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDAT 240
WD40-rpts ________________) (_________________WD 4_________________)(__________________W
Query 241 WSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE 278
WD40-rpts D 5__________________)
5 WD40-repeats found in QUERY=ENSP00000400321 (Len=278):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 18-55 5.73 351.34 0.00115 12.5% 34.88
WD 2: Seg 7 93-132 8.72 474.71 2.5e-05 37.5% 55.67
WD 3: Seg 11 133-177 6.89 399.38 0.00026 27.5% 53.54
WD 4: Seg 15 181-220 8.48 465.00 3.4e-05 35.0% 52.14
WD 5: Seg 19 221-262 6.58 386.32 0.00039 17.5% 55.80
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 18-55 NL----P-PNAPACMERQLEAARYRS-DGA--LLLGASSLSGRCWA
WD 2 93-132 -G----ILVASDSAHAAQVTCVAASPHKDS-VFLSCSEDNRILLWD
WD 3 133-177 TRCPKPASQIGCSAPGYLPTSLAWHPQQSE-VFVFGDENGTVSLVD
WD 4 181-220 -T----SCVLSSAVHSQCVTGLVFSP-HSVPFLASLSEDCSLAVLD
WD 5 221-262 SS---LSELFRSQAHRDFVRDATWSP-LNHSLLTTVGWDHQVVHHV
WD40 Template TG----ECLRTLSGHTSGVTSVSFSP-DGK-RLVSGSEDGTIKVWD