Input parameters:
Query = ENSP00000400160 (Len=191)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000400160, Len=191):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTSVPVKERVKVSQNWRLGRCREGILLKWRCRQMPWMQLEDDSLYISQANFILAYQFRPDGASLNRRPLGVFAGHDEDVC 80
WD40-rpts (________________WD 1_______________) (_____________
Query 81 HFVLANSHIVSAGGDGKIGIHKIHSTFTVKYSAHEQEVNCVDCKGGIIVSGSRDRTAKVWPLASGRLGQCLHTIQTEDRV 160
WD40-rpts __WD 2_______________)(_________________WD 3________________) (_______________
Query 161 WSIAISPLLSSFVTGTACCGHFSPLRIWDLN 191
WD40-rpts _____WD 4___________________)
4 WD40-repeats found in QUERY=ENSP00000400160 (Len=191):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 21-57 4.02 280.72 0.01022 7.5% 44.98
WD 2: Seg 6 67-102 6.76 393.76 0.00031 25.0% 45.82
WD 3: Seg 10 103-141 7.00 404.01 0.00022 35.0% 44.10
WD 4: Seg 14 145-189 6.07 365.43 0.00074 25.0% 50.83
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 21-57 -CREGI-LLKW--RCRQMPWMQLEDDS--LYISQ----ANFILAYQF
WD 2 67-102 --RPLG-VFAG--HDEDVCH--FVLANSHIVSAG----GDGKIGIHK
WD 3 103-141 IHSTFTVKYSA--HEQEVNCV--DCKGGIIVSGS----RDRTAKVWP
WD 4 145-189 -GRLGQ-CLHTIQTEDRVWSIAISPLLSSFVTGTACCGHFSPLRIWD
WD40 Template TGECLR-TLSG--HTSGVTSVSFSPDGKRLVSGS----EDGTIKVWD