WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000398925    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000398925 (Len=154)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000398925, Len=154):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNTSPGTVGSDPVILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGYQHIRMYDLNSNNPNPIIS 80  
WD40-rpts      (___________WD 1___________)   (________________WD 2________________)(__________

Query       81 YDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDLRCGGEGACCPGLGWAALGDRFRLGSLQAEAETGSFLWATY 154 
WD40-rpts      _________WD 3___________________)                                         



3 WD40-repeats found in QUERY=ENSP00000398925 (Len=154):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-28       5.06  323.53  0.00271       12.5%     42.61
  WD 2:  Seg  4    32-69       7.89  440.62  7.2e-05       25.0%     53.55
  WD 3:  Seg  8    70-113      9.45  505.18  9.7e-06       30.0%     57.49
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-28     ----------------MNTSPGTVGSDPVILATAGYDHTVRFWQ
   WD 2   32-69     -G----ICTRTVQHQDSQVNALEVTPDRSMIAAAG-YQHIRMYD
   WD 3   70-113    LNSNNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWD

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019