Input parameters:
Query = ENSP00000398925 (Len=154)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000398925, Len=154):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNTSPGTVGSDPVILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGYQHIRMYDLNSNNPNPIIS 80
WD40-rpts (___________WD 1___________) (________________WD 2________________)(__________
Query 81 YDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDLRCGGEGACCPGLGWAALGDRFRLGSLQAEAETGSFLWATY 154
WD40-rpts _________WD 3___________________)
3 WD40-repeats found in QUERY=ENSP00000398925 (Len=154):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-28 5.06 323.53 0.00271 12.5% 42.61
WD 2: Seg 4 32-69 7.89 440.62 7.2e-05 25.0% 53.55
WD 3: Seg 8 70-113 9.45 505.18 9.7e-06 30.0% 57.49
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-28 ----------------MNTSPGTVGSDPVILATAGYDHTVRFWQ
WD 2 32-69 -G----ICTRTVQHQDSQVNALEVTPDRSMIAAAG-YQHIRMYD
WD 3 70-113 LNSNNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWD
WD40 Template TG----ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD