Input parameters:
Query = ENSP00000396668 (Len=197)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000396668, Len=197):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLWSLQKARPLWITNLQEDETEEMEGPQSPGQLLNPALAHSISVASCGNIFSCGAEDGKVRIFRVMGVKCEQELGFKGHT 80
WD40-rpts (_________________WD 1_________________) (__________
Query 81 SGVSQVCFLPESYLLLTGGNDGKITLWDANSEVEKKQKSPTKRTHRKKPKRGTCTKQGGNTNASVTDEEEHGNILPKLNI 160
WD40-rpts _______WD 2________________) (___________________WD 3__________________)
Query 161 EHGEKVNWLLGTKIKGHQNILVADQTSCISVYPLNEF 197
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000396668 (Len=197):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 25-64 8.19 453.16 4.9e-05 20.0% 36.24
WD 2: Seg 6 70-108 9.64 513.06 7.6e-06 42.5% 50.35
WD 3: Seg 10 117-159 5.87 357.03 0.00096 5.0% 42.31
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 25-64 EGPQSPGQLLNPALAHSISVASCGNIFSCGAEDGK----VRIFR
WD 2 70-108 -CEQELGFKGHTSGVSQVCFLPESYLLLTGGNDGK----ITLWD
WD 3 117-159 -QKSPTKRTHRKKPKRGTCTKQGGNTNASVTDEEEHGNILPKLN
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT----IKVWD