WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000396668    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000396668 (Len=197)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000396668, Len=197):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLWSLQKARPLWITNLQEDETEEMEGPQSPGQLLNPALAHSISVASCGNIFSCGAEDGKVRIFRVMGVKCEQELGFKGHT 80  
WD40-rpts                              (_________________WD 1_________________)     (__________

Query       81 SGVSQVCFLPESYLLLTGGNDGKITLWDANSEVEKKQKSPTKRTHRKKPKRGTCTKQGGNTNASVTDEEEHGNILPKLNI 160 
WD40-rpts      _______WD 2________________)        (___________________WD 3__________________) 

Query      161 EHGEKVNWLLGTKIKGHQNILVADQTSCISVYPLNEF 197 
WD40-rpts                                           



3 WD40-repeats found in QUERY=ENSP00000396668 (Len=197):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    25-64       8.19  453.16  4.9e-05       20.0%     36.24
  WD 2:  Seg  6    70-108      9.64  513.06  7.6e-06       42.5%     50.35
  WD 3:  Seg 10   117-159      5.87  357.03  0.00096        5.0%     42.31
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   25-64     EGPQSPGQLLNPALAHSISVASCGNIFSCGAEDGK----VRIFR
   WD 2   70-108    -CEQELGFKGHTSGVSQVCFLPESYLLLTGGNDGK----ITLWD
   WD 3  117-159    -QKSPTKRTHRKKPKRGTCTKQGGNTNASVTDEEEHGNILPKLN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT----IKVWD


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Last modified: 09 Jan 2019