WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000395628    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000395628 (Len=205)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000395628, Len=205):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 80  
WD40-rpts                (_________________WD 1________________)   (_________________WD 2______

Query       81 CSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSEVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 160 
WD40-rpts      __________)   (______________WD 3______________)(______________WD 4_____________

Query      161 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 205 
WD40-rpts      )   (_________________WD 5________________)  



5 WD40-repeats found in QUERY=ENSP00000395628 (Len=205):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-49      10.86  563.33  1.6e-06       47.5%     56.72
  WD 2:  Seg  6    53-91      10.25  538.17  3.5e-06       37.5%     54.70
  WD 3:  Seg  9    95-128      5.13  326.50  0.00248       20.0%     45.63
  WD 4:  Seg 13   129-161      8.39  461.08  3.8e-05       32.5%     47.17
  WD 5:  Seg 17   165-203     10.32  540.96  3.2e-06       40.0%     55.90
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   11-49     FECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE
   WD 2   53-91     GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV
   WD 3   95-128    KECKAELREHEHVVECISWAPESSYSSISEATGS-----
   WD 4  129-161    ------EVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD
   WD 5  165-203    KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019