Input parameters:
Query = ENSP00000395594 (Len=226)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000395594, Len=226):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 80
WD40-rpts (__________________WD 1_________________) (_________________WD 2______
Query 81 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160
WD40-rpts __________) (_________________WD 3________________) (__________________WD 4
Query 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKQNHPSAPPWPGLLM 226
WD40-rpts _________________) (__________________WD 5_________________)
5 WD40-repeats found in QUERY=ENSP00000395594 (Len=226):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 4-44 8.79 477.94 2.2e-05 32.5% 54.37
WD 2: Seg 5 53-91 10.15 533.81 4.0e-06 45.0% 50.09
WD 3: Seg 9 95-133 10.89 564.51 1.5e-06 50.0% 52.08
WD 4: Seg 13 138-178 8.03 446.22 6.0e-05 30.0% 53.81
WD 5: Seg 17 182-222 8.18 452.70 4.9e-05 27.5% 48.14
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 4-44 QMTLRGTLKGHNGWVTQIATTPQFPDM--ILSASRDK--TIIMWK
WD 2 53-91 -GIPQRALRGHSHFVSDVVISSD-GQF--ALSGSWDG--TLRLWD
WD 3 95-133 -GTTTRRFVGHTKDVLSVAFSSD-NRQ--IVSGSRDK--TIKLWN
WD 4 138-178 -CKYTVQDESHSEWVSCVRFSPN-SSNPIIVSCGWDK--LVKVWN
WD 5 182-222 -CKLKTNHIGHTGYLNTVTVSPD-GSL--CASGGKQNHPSAPPWP
WD40 Template TGECLRTLSGHTSGVTSVSFSPD-GKR--LVSGSEDG--TIKVWD