WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000395594    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000395594 (Len=226)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000395594, Len=226):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 80  
WD40-rpts         (__________________WD 1_________________)        (_________________WD 2______

Query       81 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160 
WD40-rpts      __________)   (_________________WD 3________________)    (__________________WD 4

Query      161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKQNHPSAPPWPGLLM 226 
WD40-rpts      _________________)   (__________________WD 5_________________)    



5 WD40-repeats found in QUERY=ENSP00000395594 (Len=226):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       8.79  477.94  2.2e-05       32.5%     54.37
  WD 2:  Seg  5    53-91      10.15  533.81  4.0e-06       45.0%     50.09
  WD 3:  Seg  9    95-133     10.89  564.51  1.5e-06       50.0%     52.08
  WD 4:  Seg 13   138-178      8.03  446.22  6.0e-05       30.0%     53.81
  WD 5:  Seg 17   182-222      8.18  452.70  4.9e-05       27.5%     48.14
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    4-44     QMTLRGTLKGHNGWVTQIATTPQFPDM--ILSASRDK--TIIMWK
   WD 2   53-91     -GIPQRALRGHSHFVSDVVISSD-GQF--ALSGSWDG--TLRLWD
   WD 3   95-133    -GTTTRRFVGHTKDVLSVAFSSD-NRQ--IVSGSRDK--TIKLWN
   WD 4  138-178    -CKYTVQDESHSEWVSCVRFSPN-SSNPIIVSCGWDK--LVKVWN
   WD 5  182-222    -CKLKTNHIGHTGYLNTVTVSPD-GSL--CASGGKQNHPSAPPWP

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-GKR--LVSGSEDG--TIKVWD


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Last modified: 09 Jan 2019