Input parameters:
Query = ENSP00000395575 (Len=409)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000395575, Len=409):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 XVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPEKIAELESHT 80
WD40-rpts (______________WD 1______________) (__________
Query 81 DKVDSIQFCNNGDRFLSGSRDGTARIWRFEQLEWRSILLDMATRISGDLSSEEERFMKPKVTMIAWNQNDSIVVTAVNDH 160
WD40-rpts _______WD 2________________) (_________________________WD 3___________________
Query 161 VLKVWNSYTGQLLHNLMGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGTKMKHYFNMIEGQGHGAVFDCKFSQDG 240
WD40-rpts _____) (_________________WD 4_________________) (___________________WD 5____
Query 241 QHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPHLMPPPFLVDVDGNPHPTKYQRLV 320
WD40-rpts _______________)(_______________WD 6_______________) (_________________WD
Query 321 PGRENSADEHLIPQLGYVATSDGEVIEQIISLQTNDNDERSPESSILDGMIRQLQQQQDQRMGADQDTIPRGLSNGEETP 400
WD40-rpts 7________________)
Query 401 RRGSWKTSD 409
WD40-rpts
7 WD40-repeats found in QUERY=ENSP00000395575 (Len=409):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 31-64 6.96 402.13 0.00024 22.5% 42.70
WD 2: Seg 6 70-108 10.13 533.27 4.0e-06 40.0% 55.21
WD 3: Seg 10 112-166 6.99 403.44 0.00023 20.0% 36.06
WD 4: Seg 14 170-209 9.05 488.42 1.6e-05 35.0% 55.84
WD 5: Seg 18 213-256 6.85 397.77 0.00027 20.0% 52.77
WD 6: Seg 22 257-292 5.55 344.02 0.00144 10.0% 12.45
WD 7: Seg 26 301-339 6.40 379.16 0.00048 7.5% 19.75
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 31-64 -----EKPRPGVQ-----MLCSSFS----------------V-GGMFLATGSTDHVIRMYF
WD 2 70-108 PEKIAELESHTDK-----VDSIQFC----------------N-NGDRFLSGSRDGTARIWR
WD 3 112-166 LEWRSILLDMATR-----ISGDLSSEEERFMKPKVTMIAWNQ-NDSIVVTAVNDHVLKVWN
WD 4 170-209 GQLLHNLMGHADE-----VFVLETH----------------PFDSRIMLSAGHDGSIFIWD
WD 5 213-256 GTKMKHYFNMIEGQGHGAVFDCKFS----------------Q-DGQHFACTDSHGHLLIFG
WD 6 257-292 ---FGCSKPYEKI-----PDQMFFH----------------T-DYRPLIRDSNNYVLDEQT
WD 7 301-339 PPFLVDVDGNPHP-----TKYQRLV----------------P-GRENSADEHLIPQLGYVA
WD40 Template GECLRTLSGHTSG-----VTSVSFS----------------P-DGKRLVSGSEDGTIKVWD