WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000395575    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000395575 (Len=409)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000395575, Len=409):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPEKIAELESHT 80  
WD40-rpts                                    (______________WD 1______________)     (__________

Query       81 DKVDSIQFCNNGDRFLSGSRDGTARIWRFEQLEWRSILLDMATRISGDLSSEEERFMKPKVTMIAWNQNDSIVVTAVNDH 160 
WD40-rpts      _______WD 2________________)   (_________________________WD 3___________________

Query      161 VLKVWNSYTGQLLHNLMGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGTKMKHYFNMIEGQGHGAVFDCKFSQDG 240 
WD40-rpts      _____)   (_________________WD 4_________________)   (___________________WD 5____

Query      241 QHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPHLMPPPFLVDVDGNPHPTKYQRLV 320 
WD40-rpts      _______________)(_______________WD 6_______________)        (_________________WD

Query      321 PGRENSADEHLIPQLGYVATSDGEVIEQIISLQTNDNDERSPESSILDGMIRQLQQQQDQRMGADQDTIPRGLSNGEETP 400 
WD40-rpts       7________________)                                                             

Query      401 RRGSWKTSD 409 
WD40-rpts               



7 WD40-repeats found in QUERY=ENSP00000395575 (Len=409):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    31-64       6.96  402.13  0.00024       22.5%     42.70
  WD 2:  Seg  6    70-108     10.13  533.27  4.0e-06       40.0%     55.21
  WD 3:  Seg 10   112-166      6.99  403.44  0.00023       20.0%     36.06
  WD 4:  Seg 14   170-209      9.05  488.42  1.6e-05       35.0%     55.84
  WD 5:  Seg 18   213-256      6.85  397.77  0.00027       20.0%     52.77
  WD 6:  Seg 22   257-292      5.55  344.02  0.00144       10.0%     12.45
  WD 7:  Seg 26   301-339      6.40  379.16  0.00048        7.5%     19.75
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   31-64     -----EKPRPGVQ-----MLCSSFS----------------V-GGMFLATGSTDHVIRMYF
   WD 2   70-108    PEKIAELESHTDK-----VDSIQFC----------------N-NGDRFLSGSRDGTARIWR
   WD 3  112-166    LEWRSILLDMATR-----ISGDLSSEEERFMKPKVTMIAWNQ-NDSIVVTAVNDHVLKVWN
   WD 4  170-209    GQLLHNLMGHADE-----VFVLETH----------------PFDSRIMLSAGHDGSIFIWD
   WD 5  213-256    GTKMKHYFNMIEGQGHGAVFDCKFS----------------Q-DGQHFACTDSHGHLLIFG
   WD 6  257-292    ---FGCSKPYEKI-----PDQMFFH----------------T-DYRPLIRDSNNYVLDEQT
   WD 7  301-339    PPFLVDVDGNPHP-----TKYQRLV----------------P-GRENSADEHLIPQLGYVA

   WD40 Template    GECLRTLSGHTSG-----VTSVSFS----------------P-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019