WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000395297    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000395297 (Len=578)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000395297, Len=578):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKQDFKLGIPEYFNFAKDVLDQWTDKEKAGKKPSNPAFWWINRNGEEMRWSFEELGSLSRKFANILSEACSLQRGDRVIL 80  
WD40-rpts                                                                                      

Query       81 ILPRVPEWWLANVACLRTGTVLIPGTTQLTQKDILYRLQSSKANCIITNDVLAPAVDAVASKCENLHSKLIVSENSREGW 160 
WD40-rpts                                                                                      

Query      161 GNLKELMKVFLCHPGWSTVARSWLTATSTSLVQAILSLLSSWDYRHASDSHTCVKTKHNEIMAIFFTSGTSGYPKMTAHT 240 
WD40-rpts                                                                                      

Query      241 HSSFGLGLSVNGRFWLDLTPSDVMWNTSDTGWAKSAWSSVFSPWIQGACVFTHHLPRFEPTSILQTLSKYPITVFCSAPT 320 
WD40-rpts                                                   (__________________________________

Query      321 VYRMLVQNDITSYKFKSLKHCVSAGEPITPDVTEKWRNKTGLDIYEGYGQTETVLICGNFKGMKIKPGSMGKPSPAFDVK 400 
WD40-rpts      ____WD 1_____________________________________)                                  

Query      401 IVDVNGNVLPPGQEGDIGIQVLPNRPFGLFTHYVDNPSKTASTLRGNFYITGDRGYMDKDGYFWFVARADDVILSSGYRI 480 
WD40-rpts                                                                                      

Query      481 GPFEVENALNEHPSVAESAVVSSPDPIRGEVVKAFVVLNPDYKSHDQEQLIKEIQEHVKKTTAPYKYPRKVEFIQELPKT 560 
WD40-rpts                                                                                      

Query      561 ISGKTKRNELRKKEWKTI 578 
WD40-rpts                        



1 WD40-repeats found in QUERY=ENSP00000395297 (Len=578):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   286-366      2.85  232.57  0.04476       22.5%     25.79
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  286-366    QGACVFTHHLPRFEPTSILQTLSKYPITVFCSAPTVYRMLVQNDITSYKFKSLKHCVSAGEPITPDVTEKWRNKTGLDIYE

   WD40 Template    TGECLRTLSGHTSG------------VTSVSFS-----------------PDGKRLVSGSEDGT------------IKVWD


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Last modified: 09 Jan 2019