WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000395194    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000395194 (Len=139)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000395194, Len=139):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRK 80  
WD40-rpts      (_________________________________________________WD 1__________________________

Query       81 VTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDDLEQHIRSPVVLQSILSLMD 139 
WD40-rpts      _______________________)                                   



1 WD40-repeats found in QUERY=ENSP00000395194 (Len=139):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-104      2.95  236.32  0.03993       17.5%     -11.63
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-104    MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGD

   WD40 Template    TG----------------------ECLRTLSGHTSGVTSVSFSPDG--------------------KRLVSGS---------EDGT-------------IKVWD


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Last modified: 09 Jan 2019