WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000394986    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000394986 (Len=200)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000394986, Len=200):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAAAARWNHVWVGTETGILKGVNLQRKQAANFTAGGQPRREEAVSALCWGTGGETQMLVGCADRTVKHFSTEDGIFQGQ 80  
WD40-rpts                                      (_________________WD 1________________)   (_____

Query       81 RHCPGGEGMFRGLAQADGTLITCVDSGILRVWHDKDKDTSSDPLLELRVGPGVCRMRQDPAHPHVVATGGKENALKIWDL 160 
WD40-rpts      ____________WD 2________________)       (_________________WD 3________________) 

Query      161 QGSEEPVFRAKNVSDKSVKELFLKSREAEATDDALETRWT 200 
WD40-rpts                                              



3 WD40-repeats found in QUERY=ENSP00000394986 (Len=200):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    33-71       5.62  347.00  0.00131       15.0%     43.72
  WD 2:  Seg  6    75-113      6.92  400.33  0.00025       12.5%     46.18
  WD 3:  Seg 10   121-159      6.07  365.21  0.00074       15.0%     45.89
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   33-71     -FTAGGQPRREEAVSALCWGTGGETQMLVGCADRTVKHFS
   WD 2   75-113    GIFQGQRHCPGGEGMFRGLAQADG-TLITCVDSGILRVWH
   WD 3  121-159    SDPLLELRVGPGVCRMRQDPAHPH-VVATGGKENALKIWD

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019