Input parameters:
Query = ENSP00000394986 (Len=200)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000394986, Len=200):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAAAARWNHVWVGTETGILKGVNLQRKQAANFTAGGQPRREEAVSALCWGTGGETQMLVGCADRTVKHFSTEDGIFQGQ 80
WD40-rpts (_________________WD 1________________) (_____
Query 81 RHCPGGEGMFRGLAQADGTLITCVDSGILRVWHDKDKDTSSDPLLELRVGPGVCRMRQDPAHPHVVATGGKENALKIWDL 160
WD40-rpts ____________WD 2________________) (_________________WD 3________________)
Query 161 QGSEEPVFRAKNVSDKSVKELFLKSREAEATDDALETRWT 200
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000394986 (Len=200):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 33-71 5.62 347.00 0.00131 15.0% 43.72
WD 2: Seg 6 75-113 6.92 400.33 0.00025 12.5% 46.18
WD 3: Seg 10 121-159 6.07 365.21 0.00074 15.0% 45.89
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 33-71 -FTAGGQPRREEAVSALCWGTGGETQMLVGCADRTVKHFS
WD 2 75-113 GIFQGQRHCPGGEGMFRGLAQADG-TLITCVDSGILRVWH
WD 3 121-159 SDPLLELRVGPGVCRMRQDPAHPH-VVATGGKENALKIWD
WD40 Template GECLRTLSGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD