Input parameters:
Query = ENSP00000394470 (Len=153)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000394470, Len=153):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 80
WD40-rpts (__________________WD 1_________________) (_________________WD 2______
Query 81 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQSHSVAQAGVQ 153
WD40-rpts __________) (_________________WD 3________________)
3 WD40-repeats found in QUERY=ENSP00000394470 (Len=153):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 4-44 8.86 480.49 2.1e-05 32.5% 54.68
WD 2: Seg 5 53-91 10.15 533.75 4.0e-06 45.0% 54.39
WD 3: Seg 9 95-133 10.85 562.85 1.6e-06 50.0% 54.71
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 4-44 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK
WD 2 53-91 -GIPQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWD
WD 3 95-133 -GTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKLWN
WD40 Template TGECLRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD