Input parameters:
Query = ENSP00000393350 (Len=178)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000393350, Len=178):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEDDAPVIYGLEFQESSSQAVLASSASLEGKGQLKFTSGRWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLV 80
WD40-rpts (_________________WD 1________________) (_____________
Query 81 RDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVILSNMVSISSEPFG 160
WD40-rpts ____WD 2_________________) (_________________WD 3_________________)
Query 161 HLVDDDDISDQEDHRSEE 178
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000393350 (Len=178):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 24-62 6.16 368.99 0.00066 27.5% 51.42
WD 2: Seg 7 67-106 7.18 411.46 0.00018 25.0% 46.52
WD 3: Seg 10 111-150 7.64 430.42 9.8e-05 22.5% 51.52
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 24-62 --SSASLEGKGQLKFTSGRWSP-HHNCTQVATANDTTLRGWD
WD 2 67-106 SQIYCIENAHGQ-LVRDLDFNP-NKQYYLASCGDDCKVKFWD
WD 3 111-150 TEPVKTLEEHSH-WVWNVRYNHSHDQ-LVLTGSSDSRVILSN
WD40 Template GECLRTLSGHTS-GVTSVSFSP-DGK-RLVSGSEDGTIKVWD