Input parameters:

  Query = ENSP00000393182 (Len=561)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000393182, Len=561):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSVESEEAEKVTQRNKNYEVLCRNRLGNDLYVERMMQTFNGAPKNKDVQCDKIIMEDKGIMSTAWDLYDSYNAMELVSL 80  
WD40-rpts                                                                                      

Query       81 SVKQSVVESSSKANVLPKDQDQRLPGSTTEKNSETSSLMDIENVILAKIHEDEEDHSDAILKSDKFHQDLFFMERVLMEN 160 
WD40-rpts                                                                                      

Query      161 IFQPKLAAYRQLPVLKEPEPEEPEDVLESAKHEEVEEESKKEEEEEIHAEESTIPANLERLWSFSCDLTKGLNVSSLAWN 240 
WD40-rpts                                                                                      

Query      241 KTNPDLLAVGYGHFGFKEQKRGLACCWSIKNPMWPERIYQSPYGVTAVDFSIGAPNLLAVGYHNGTIAIYNVRSNSNVPV 320 
WD40-rpts                                  (___________________WD 1__________________)         

Query      321 LDSSESPQKHLGPVWQLQWIEQDRGTTGDGKREILVSISADGRISKWVIRKGLDCYDLMRLKRTTAASNKKGGEKEKKDE 400 
WD40-rpts        (____________________WD 2____________________)                                

Query      401 ALISRQAPGMCFAFHPKGPVYKVTWNPFCHDVFLSCSADWGVIIWQQENVKPSLSFYPATSVVYDVAWSPKSSYIFAAAN 480 
WD40-rpts            (_________________WD 3_________________)   (_________________WD 4_________

Query      481 ENRVEIWDLHISTLDPLIVNTANPGIKFTTILFAKQTDCLLVGDSDGQVSVYELRNMPTVLETGRGDIMDTLLGSKSNQS 560 
WD40-rpts      _______)      (_________________WD 5________________)                           

Query      561 A 561 
WD40-rpts       

5 WD40-repeats found in QUERY=ENSP00000393182 (Len=561):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   269-311      4.58  303.99  0.00497       27.5%     47.92
  WD 2:  Seg  9   323-368      4.68  307.89  0.00441       27.5%     40.87
  WD 3:  Seg 14   407-446      4.71  309.33  0.00422       17.5%     50.75
  WD 4:  Seg 18   450-488      6.29  374.31  0.00056       20.0%     52.45
  WD 5:  Seg 22   495-533      5.00  321.08  0.00293       17.5%     56.29

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  269-311    IKNPMWPERIYQSPYGVTAVDFSIGA-PN---------LLAVGYHNGTIAIYN
   WD 2  323-368    SSE-----SPQKHLGPVWQLQWIE-Q-DRGTTGDGKREILVSISADGRISKWV
   WD 3  407-446    -APGM--CFAFHPKGPVYKVTWNP-FCHD---------VFLSCSADWGVIIWQ
   WD 4  450-488    -VKPS--LSFYPATSVVYDVAWSP-K-SS---------YIFAAANENRVEIWD
   WD 5  495-533    -DPLI--VNTANPGIKFTTILFAK-Q-TD---------CLLVGDSDGQVSVYE

   WD40 Template    TGECL--RTLSGHTSGVTSVSFSP-D-GK---------RLVSGSEDGTIKVWD