WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000391530    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000391530 (Len=367)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000391530, Len=367):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNRFRVSKFRHTEARPPRREDKQLRIFDPRTKPRASQSTQAHENSRDSRLAWMGTWEHLVSTGFNQMREREVKLWDTRFF 80  
WD40-rpts      (___________WD 1___________)                                                (___

Query       81 SSALASLTLDTSLGCLVPLLDPDSGLLVLAGKGERQLYCYEVVPQQPALSPVTQCVLESVLRGAALVPRQALAVMSCEVL 160 
WD40-rpts      _________________WD 2___________________)                                       

Query      161 RVLQLSDTAIVPIGYHVPRKAVEFHEDLFPDTAGCVPATDPHSWWAGDNQQVQKVSLNPACRPHPSFTSCLVPPAEPLPD 240 
WD40-rpts                                                                                      

Query      241 TAQPAVMETPVGDADASEGFSSPPSSLTSPSTPSSLGPSLSSTSGIGTSPSLRSLQSLLGPSSKFRHAQGTVLHRDSHIT 320 
WD40-rpts                                                                                      

Query      321 NLKGLNLTTPGESDGFCANKLRVAVPLLSSGGQVAVLEMREKRHREV 367 
WD40-rpts                                                     



2 WD40-repeats found in QUERY=ENSP00000391530 (Len=367):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-28       3.43  256.17  0.02177       12.5%     33.58
  WD 2:  Seg  7    77-121      3.15  244.98  0.03067       17.5%     34.89
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-28     ----------------MNRFRVSKFRHTEAR-PPRREDKQLRIFD
   WD 2   77-121    TRFFSSALASLTLDTSLGCLVPLLDPDSGLLVLAGKGERQLYCYE

   WD40 Template    TGECLRTLS----GHTSGVTSVSFSPDGKRL-VSGSEDGTIKVWD


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Last modified: 09 Jan 2019