WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000389916    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000389916 (Len=517)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000389916, Len=517):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKFVIAGRADCPYYAKTELVADYLQKNLPDFRIHKITQRPEVWEDWLKDVCEKNKWSHKNSPIIWRELLDRGGKGLLLG 80  
WD40-rpts                                                                             (________

Query       81 GYNEFLEHAQLYYDVTSSMTTELMMVIAQENLGAHIEKEQEEEALKTCINPLQVWITSASAPACYNLIPILTSGEVFGMH 160 
WD40-rpts      __________________________________WD 1_________________________________________)

Query      161 TEISITLFDNKQAEEHLKSLVVETQDLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDCLRSRVPLCRLYG 240 
WD40-rpts                                                                                      

Query      241 YLIEKNAHESVRVIVGGRTFVNLKTVLLMRYAPRIAHNIIAVALGVEGEAKAILARKLKTAPSYIKDVIIWGNISGNNYV 320 
WD40-rpts                                                                                      

Query      321 DLRKTRVYRYESAIWGPLHYSRPVLNLIFDSEWVKREFVAILKNLTTTGRQFGGILAAHSIATTLKYWYHGSPPGEIVSL 400 
WD40-rpts                                                                                      

Query      401 GILSEGQFGIPKGIVFSMPVKFENGTWVVLTDLKDVEISEQIMTRMTSDLIQEKLVALGDKIHFQPYQSGHKDLVPDEEK 480 
WD40-rpts                                                                                      

Query      481 NLAMSDAEFPNQIPQTTFEKPQSLEFLNEFEGKTVES 517 
WD40-rpts                                           



1 WD40-repeats found in QUERY=ENSP00000389916 (Len=517):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    72-160      3.00  238.47  0.03741       25.0%      3.20
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   72-160    RGGKGLLLGGYNEFLEHAQLYYDVTSSMTTELMMVIAQENLGAHIEKEQEEEALKTCINPLQVWITSASAPACYNLIPILTSGEVFGMH

   WD40 Template    TGECLRTLSG-------------HTSGVT--------------SV-----------SFSPDGKRLVSGSED-----------GTIKVWD


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Last modified: 09 Jan 2019